[INFO] fetching crate noodles-bam 0.15.0... [INFO] testing noodles-bam-0.15.0 against beta-2022-02-22 for beta-1.60-1 [INFO] extracting crate noodles-bam 0.15.0 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate noodles-bam 0.15.0 on toolchain beta-2022-02-22 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate noodles-bam 0.15.0 [INFO] finished tweaking crates.io crate noodles-bam 0.15.0 [INFO] tweaked toml for crates.io crate noodles-bam 0.15.0 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate crates.io crate noodles-bam 0.15.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6f3b02437f5fe455a95450a9885b7e2ca4b209abd46148a1ca8c248b2ed3a07f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6f3b02437f5fe455a95450a9885b7e2ca4b209abd46148a1ca8c248b2ed3a07f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6f3b02437f5fe455a95450a9885b7e2ca4b209abd46148a1ca8c248b2ed3a07f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6f3b02437f5fe455a95450a9885b7e2ca4b209abd46148a1ca8c248b2ed3a07f", kill_on_drop: false }` [INFO] [stdout] 6f3b02437f5fe455a95450a9885b7e2ca4b209abd46148a1ca8c248b2ed3a07f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] da6fe18df3cd093024ad6cf04b79e465bb3c5699ea60c82b1d19688c6434beb8 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "da6fe18df3cd093024ad6cf04b79e465bb3c5699ea60c82b1d19688c6434beb8", kill_on_drop: false }` [INFO] [stderr] Compiling noodles-bgzf v0.9.0 [INFO] [stderr] Compiling noodles-sam v0.12.0 [INFO] [stderr] Compiling noodles-csi v0.5.0 [INFO] [stderr] Compiling noodles-core v0.4.0 [INFO] [stderr] Compiling noodles-bam v0.15.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 7.60s [INFO] running `Command { std: "docker" "inspect" "da6fe18df3cd093024ad6cf04b79e465bb3c5699ea60c82b1d19688c6434beb8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "da6fe18df3cd093024ad6cf04b79e465bb3c5699ea60c82b1d19688c6434beb8", kill_on_drop: false }` [INFO] [stdout] da6fe18df3cd093024ad6cf04b79e465bb3c5699ea60c82b1d19688c6434beb8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] b9a6a038fa5eb624a2da44e7be09b6c0a4005e48fdda65d4d3a3606995530784 [INFO] running `Command { std: "docker" "start" "-a" "b9a6a038fa5eb624a2da44e7be09b6c0a4005e48fdda65d4d3a3606995530784", kill_on_drop: false }` [INFO] [stderr] Compiling num_cpus v1.13.1 [INFO] [stderr] Compiling tokio v1.17.0 [INFO] [stderr] Compiling noodles-bam v0.15.0 (/opt/rustwide/workdir) [INFO] [stdout] error[E0432]: unresolved import `futures` [INFO] [stdout] --> examples/bam_query_async.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use futures::TryStreamExt; [INFO] [stdout] | ^^^^^^^ use of undeclared crate or module `futures` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> examples/bam_query_async.rs:22:54 [INFO] [stdout] | [INFO] [stdout] 22 | let mut reader = File::open(&src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> examples/bam_read_header_async.rs:17:53 [INFO] [stdout] | [INFO] [stdout] 17 | let mut reader = File::open(src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `futures` [INFO] [stdout] --> examples/bam_reheader_async.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use futures::TryStreamExt; [INFO] [stdout] | ^^^^^^^ use of undeclared crate or module `futures` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> examples/bam_reheader_async.rs:18:53 [INFO] [stdout] | [INFO] [stdout] 18 | let mut reader = File::open(src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `r#async` in `bai` [INFO] [stdout] --> examples/bam_query_async.rs:26:22 [INFO] [stdout] | [INFO] [stdout] 26 | let index = bai::r#async::read(src.with_extension("bam.bai")).await?; [INFO] [stdout] | ^^^^^^^ could not find `r#async` in `bai` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0433`. [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncWriter` in `bam` [INFO] [stdout] --> examples/bam_reheader_async.rs:24:27 [INFO] [stdout] | [INFO] [stdout] 24 | let mut writer = bam::AsyncWriter::new(io::stdout()); [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncWriter` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 3 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncWriter` in `bam` [INFO] [stdout] --> examples/bam_write_async.rs:16:27 [INFO] [stdout] | [INFO] [stdout] 16 | let mut writer = bam::AsyncWriter::new(io::stdout()); [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncWriter` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `noodles-bam` due to 2 previous errors [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] error: aborting due to 3 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `futures` [INFO] [stdout] --> examples/bam_view_async.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use futures::TryStreamExt; [INFO] [stdout] | ^^^^^^^ use of undeclared crate or module `futures` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> examples/bam_idxstats_async.rs:20:54 [INFO] [stdout] | [INFO] [stdout] 20 | let mut reader = File::open(&src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> examples/bam_view_async.rs:16:53 [INFO] [stdout] | [INFO] [stdout] 16 | let mut reader = File::open(src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `r#async` in `bai` [INFO] [stdout] --> examples/bam_idxstats_async.rs:23:22 [INFO] [stdout] | [INFO] [stdout] 23 | let index = bai::r#async::read(src.with_extension("bam.bai")).await?; [INFO] [stdout] | ^^^^^^^ could not find `r#async` in `bai` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0433`. [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] warning: unused import: `binning_index::ReferenceSequenceExt` [INFO] [stdout] --> examples/bam_idxstats_async.rs:12:19 [INFO] [stdout] | [INFO] [stdout] 12 | use noodles_csi::{binning_index::ReferenceSequenceExt, BinningIndex}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BinningIndex` [INFO] [stdout] --> examples/bam_idxstats_async.rs:12:56 [INFO] [stdout] | [INFO] [stdout] 12 | use noodles_csi::{binning_index::ReferenceSequenceExt, BinningIndex}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors; 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0433`. [INFO] [stdout] [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "b9a6a038fa5eb624a2da44e7be09b6c0a4005e48fdda65d4d3a3606995530784", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b9a6a038fa5eb624a2da44e7be09b6c0a4005e48fdda65d4d3a3606995530784", kill_on_drop: false }` [INFO] [stdout] b9a6a038fa5eb624a2da44e7be09b6c0a4005e48fdda65d4d3a3606995530784