[INFO] fetching crate librna-sys 0.1.3... [INFO] testing librna-sys-0.1.3 against beta-2022-02-22 for beta-1.60-1 [INFO] extracting crate librna-sys 0.1.3 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate librna-sys 0.1.3 on toolchain beta-2022-02-22 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate librna-sys 0.1.3 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate librna-sys 0.1.3 [INFO] tweaked toml for crates.io crate librna-sys 0.1.3 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate crates.io crate librna-sys 0.1.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pkg-config v0.3.19 [INFO] [stderr] Downloaded unicode-xid v0.2.1 [INFO] [stderr] Downloaded which v3.1.1 [INFO] [stderr] Downloaded cexpr v0.4.0 [INFO] [stderr] Downloaded indoc-impl v0.3.6 [INFO] [stderr] Downloaded indoc v0.3.6 [INFO] [stderr] Downloaded nom v5.1.2 [INFO] [stderr] Downloaded thread_local v1.0.1 [INFO] [stderr] Downloaded clang-sys v1.0.0 [INFO] [stderr] Downloaded unicode-width v0.1.8 [INFO] [stderr] Downloaded version_check v0.9.2 [INFO] [stderr] Downloaded unindent v0.1.7 [INFO] [stderr] Downloaded regex-syntax v0.6.18 [INFO] [stderr] Downloaded syn v1.0.41 [INFO] [stderr] Downloaded pyo3-macros v0.13.2 [INFO] [stderr] Downloaded libloading v0.6.3 [INFO] [stderr] Downloaded lock_api v0.4.4 [INFO] [stderr] Downloaded instant v0.1.9 [INFO] [stderr] Downloaded ghost v0.1.2 [INFO] [stderr] Downloaded parking_lot_core v0.8.3 [INFO] [stderr] Downloaded inventory v0.1.10 [INFO] [stderr] Downloaded inventory-impl v0.1.10 [INFO] [stderr] Downloaded libc v0.2.76 [INFO] [stderr] Downloaded pyo3-macros-backend v0.13.2 [INFO] [stderr] Downloaded proc-macro2 v1.0.19 [INFO] [stderr] Downloaded bindgen v0.58.1 [INFO] [stderr] Downloaded bitflags v1.2.1 [INFO] [stderr] Downloaded pyo3 v0.13.2 [INFO] [stderr] Downloaded smallvec v1.6.1 [INFO] [stderr] Downloaded quote v1.0.7 [INFO] [stderr] Downloaded paste-impl v0.1.18 [INFO] [stderr] Downloaded paste v0.1.18 [INFO] [stderr] Downloaded redox_syscall v0.2.8 [INFO] [stderr] Downloaded parking_lot v0.11.1 [INFO] [stderr] Downloaded log v0.4.11 [INFO] [stderr] Downloaded hermit-abi v0.1.15 [INFO] [stderr] Downloaded memchr v2.3.3 [INFO] [stderr] Downloaded shlex v1.0.0 [INFO] [stderr] Downloaded proc-macro-hack v0.5.19 [INFO] [stderr] Downloaded clap v2.33.3 [INFO] [stderr] Downloaded termcolor v1.1.0 [INFO] [stderr] Downloaded env_logger v0.8.3 [INFO] [stderr] Downloaded aho-corasick v0.7.13 [INFO] [stderr] Downloaded regex v1.3.9 [INFO] [stderr] Downloaded ctor v0.1.16 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c406082b4e3d2f96620c8ecdae7d7667783e94ca252d42413b731d5b5c5af439 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c406082b4e3d2f96620c8ecdae7d7667783e94ca252d42413b731d5b5c5af439", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c406082b4e3d2f96620c8ecdae7d7667783e94ca252d42413b731d5b5c5af439", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c406082b4e3d2f96620c8ecdae7d7667783e94ca252d42413b731d5b5c5af439", kill_on_drop: false }` [INFO] [stdout] c406082b4e3d2f96620c8ecdae7d7667783e94ca252d42413b731d5b5c5af439 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 83f04c4d73e23222ee77ce378abc76ba1149024090bdee9f33fe18e40b8bcf2f [INFO] running `Command { std: "docker" "start" "-a" "83f04c4d73e23222ee77ce378abc76ba1149024090bdee9f33fe18e40b8bcf2f", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.76 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling bindgen v0.58.1 [INFO] [stderr] Compiling shlex v1.0.0 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.8.3 [INFO] [stderr] Compiling librna-sys v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: LIBRNA_INCLUDE_DIR not set. [INFO] [stderr] warning: Using LIBRNA_INCLUDE_DIR=/usr/include as default. [INFO] [stderr] warning: LIBRNA_LIB_DIR not set. [INFO] [stderr] warning: Using LIBRNA_LIB_DIR=/usr/lib as default. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `librna-sys v0.1.3 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/librna-sys-fbea23a8657d7051/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=LIBRNA_INCLUDE_DIR not set. [INFO] [stderr] cargo:warning=Using LIBRNA_INCLUDE_DIR=/usr/include as default. [INFO] [stderr] cargo:include=/usr/include [INFO] [stderr] cargo:warning=LIBRNA_LIB_DIR not set. [INFO] [stderr] cargo:warning=Using LIBRNA_LIB_DIR=/usr/lib as default. [INFO] [stderr] cargo:rustc-link-search=native=/usr/lib [INFO] [stderr] cargo:rustc-link-lib=static=RNA [INFO] [stderr] cargo:rerun-if-changed=src/wrapper.h [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] src/wrapper.h:1:10: fatal error: 'ViennaRNA/2Dfold.h' file not found [INFO] [stderr] src/wrapper.h:1:10: fatal error: 'ViennaRNA/2Dfold.h' file not found, err: true [INFO] [stderr] thread 'main' panicked at 'Unable to generate bindings: ()', src/build.rs:72:10 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ac9874405c - std::backtrace_rs::backtrace::libunwind::trace::h02555d7ca8aa068a [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x55ac9874405c - std::backtrace_rs::backtrace::trace_unsynchronized::h8555a46024147da8 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55ac9874405c - std::sys_common::backtrace::_print_fmt::h4c7f50b4f105da1e [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x55ac9874405c - ::fmt::ha305a40dbc030444 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x55ac9876b8bc - core::fmt::write::hadd15acf4d6ce273 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/fmt/mod.rs:1190:17 [INFO] [stderr] 5: 0x55ac9873fac8 - std::io::Write::write_fmt::h0f87f6c0c21ec48a [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/io/mod.rs:1657:15 [INFO] [stderr] 6: 0x55ac987464b7 - std::sys_common::backtrace::_print::h0dd5c0810675bd8c [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x55ac987464b7 - std::sys_common::backtrace::print::h20a2155fa0a22ca6 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x55ac987464b7 - std::panicking::default_hook::{{closure}}::habb3b6f3ccdfe00a [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x55ac9874617f - std::panicking::default_hook::h1c5cf4d5063a38e4 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x55ac98746c0a - std::panicking::rust_panic_with_hook::hb5de7a3072d2cf59 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x55ac987468f7 - std::panicking::begin_panic_handler::{{closure}}::h5106de2f55f1a411 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:588:13 [INFO] [stderr] 12: 0x55ac98744524 - std::sys_common::backtrace::__rust_end_short_backtrace::h5ad5c2a8a003ca72 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x55ac98746609 - rust_begin_unwind [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:584:5 [INFO] [stderr] 14: 0x55ac9822aaf3 - core::panicking::panic_fmt::hfb4b8460cd493e74 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/panicking.rs:143:14 [INFO] [stderr] 15: 0x55ac9822abe3 - core::result::unwrap_failed::hf9b34e307f812de0 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/result.rs:1749:5 [INFO] [stderr] 16: 0x55ac9822ce65 - core::result::Result::expect::h02b7ab9ba8488f8c [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/result.rs:1022:23 [INFO] [stderr] 17: 0x55ac9822dbb6 - build_script_build::main::h4770b21043d08ca8 [INFO] [stderr] at /opt/rustwide/workdir/src/build.rs:67:20 [INFO] [stderr] 18: 0x55ac9823035b - core::ops::function::FnOnce::call_once::ha87e808f24f8666d [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55ac9822c2de - std::sys_common::backtrace::__rust_begin_short_backtrace::h8c8bff610ede4f87 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stderr] 20: 0x55ac9822cef1 - std::rt::lang_start::{{closure}}::hb10bef5b28ec1888 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/rt.rs:145:18 [INFO] [stderr] 21: 0x55ac98743741 - core::ops::function::impls:: for &F>::call_once::h9e134bb161d17658 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55ac98743741 - std::panicking::try::do_call::h7f361d911648db1a [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:492:40 [INFO] [stderr] 23: 0x55ac98743741 - std::panicking::try::hbe441b12f8ff00e7 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:456:19 [INFO] [stderr] 24: 0x55ac98743741 - std::panic::catch_unwind::h12066b7ab56d7459 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panic.rs:137:14 [INFO] [stderr] 25: 0x55ac98743741 - std::rt::lang_start_internal::{{closure}}::h901c86e61467dcde [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/rt.rs:128:48 [INFO] [stderr] 26: 0x55ac98743741 - std::panicking::try::do_call::h1817b5f028d90a8c [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:492:40 [INFO] [stderr] 27: 0x55ac98743741 - std::panicking::try::hd5afeaf2f0454960 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:456:19 [INFO] [stderr] 28: 0x55ac98743741 - std::panic::catch_unwind::h13348562ae6426ca [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panic.rs:137:14 [INFO] [stderr] 29: 0x55ac98743741 - std::rt::lang_start_internal::hf194c7db73fedcb2 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/rt.rs:128:20 [INFO] [stderr] 30: 0x55ac9822cec0 - std::rt::lang_start::h6456e27deffabb6b [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/rt.rs:144:17 [INFO] [stderr] 31: 0x55ac9822df8c - main [INFO] [stderr] 32: 0x7f31709b70b3 - __libc_start_main [INFO] [stderr] 33: 0x55ac9822b37e - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "83f04c4d73e23222ee77ce378abc76ba1149024090bdee9f33fe18e40b8bcf2f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "83f04c4d73e23222ee77ce378abc76ba1149024090bdee9f33fe18e40b8bcf2f", kill_on_drop: false }` [INFO] [stdout] 83f04c4d73e23222ee77ce378abc76ba1149024090bdee9f33fe18e40b8bcf2f