[INFO] fetching crate gkl 0.1.1...
[INFO] testing gkl-0.1.1 against beta-2022-02-22 for beta-1.60-1
[INFO] extracting crate gkl 0.1.1 into /workspace/builds/worker-0/source
[INFO] validating manifest of crates.io crate gkl 0.1.1 on toolchain beta-2022-02-22
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gkl 0.1.1
[INFO] finished tweaking crates.io crate gkl 0.1.1
[INFO] tweaked toml for crates.io crate gkl 0.1.1 written to /workspace/builds/worker-0/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 056726db46bd0bdd6755f3a025cdca17d20e4aaf58be2509175b43a2f6528269
[INFO] running `Command { std: "docker" "start" "-a" "056726db46bd0bdd6755f3a025cdca17d20e4aaf58be2509175b43a2f6528269", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "056726db46bd0bdd6755f3a025cdca17d20e4aaf58be2509175b43a2f6528269", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "056726db46bd0bdd6755f3a025cdca17d20e4aaf58be2509175b43a2f6528269", kill_on_drop: false }`
[INFO] [stdout] 056726db46bd0bdd6755f3a025cdca17d20e4aaf58be2509175b43a2f6528269
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 52c1b60d25655bfd37c19419608b00b04d66a14cc5a1c1e8cb0b5a60eef9bde1
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "52c1b60d25655bfd37c19419608b00b04d66a14cc5a1c1e8cb0b5a60eef9bde1", kill_on_drop: false }`
[INFO] [stderr]    Compiling gkl v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 6.77s
[INFO] running `Command { std: "docker" "inspect" "52c1b60d25655bfd37c19419608b00b04d66a14cc5a1c1e8cb0b5a60eef9bde1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "52c1b60d25655bfd37c19419608b00b04d66a14cc5a1c1e8cb0b5a60eef9bde1", kill_on_drop: false }`
[INFO] [stdout] 52c1b60d25655bfd37c19419608b00b04d66a14cc5a1c1e8cb0b5a60eef9bde1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 313131b04dfae5fb6a2aced23494bd7b570e98e27f3e179211430613d86923a4
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "313131b04dfae5fb6a2aced23494bd7b570e98e27f3e179211430613d86923a4", kill_on_drop: false }`
[INFO] [stderr]    Compiling gkl v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 2.58s
[INFO] running `Command { std: "docker" "inspect" "313131b04dfae5fb6a2aced23494bd7b570e98e27f3e179211430613d86923a4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "313131b04dfae5fb6a2aced23494bd7b570e98e27f3e179211430613d86923a4", kill_on_drop: false }`
[INFO] [stdout] 313131b04dfae5fb6a2aced23494bd7b570e98e27f3e179211430613d86923a4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] c73fd920ee4ee8486ac62ed79aa7579e049365d924c3d66dd79b3b6a94228fc0
[INFO] running `Command { std: "docker" "start" "-a" "c73fd920ee4ee8486ac62ed79aa7579e049365d924c3d66dd79b3b6a94228fc0", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.02s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/gkl-1652d66ff9543ace)
[INFO] [stdout] 
[INFO] [stderr]      Running tests/pairhmm.rs (/opt/rustwide/target/debug/deps/pairhmm-c3df4a0bac3a59b1)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test simple ... ok
[INFO] [stderr]      Running tests/smithwaterman.rs (/opt/rustwide/target/debug/deps/smithwaterman-99a24695c4c98cbf)
[INFO] [stdout] test data_file ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.30s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test degenerate_alignment_with_indels_at_both_ends ... ok
[INFO] [stdout] test read_aligned_to_ref_complex_alignment ... ok
[INFO] [stdout] test single_element ... ok
[INFO] [stdout] test two_element ... ok
[INFO] [stdout] test substring_match ... ok
[INFO] [stdout] test odd_no_alignment ... ok
[INFO] [stdout] test substring_match_long ... ok
[INFO] [stdout] test indels_at_start_and_end ... ok
[INFO] [stdout] test identical_alignments_with_differing_flank_lengths ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests gkl
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c73fd920ee4ee8486ac62ed79aa7579e049365d924c3d66dd79b3b6a94228fc0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c73fd920ee4ee8486ac62ed79aa7579e049365d924c3d66dd79b3b6a94228fc0", kill_on_drop: false }`
[INFO] [stdout] c73fd920ee4ee8486ac62ed79aa7579e049365d924c3d66dd79b3b6a94228fc0