[INFO] fetching crate fasten 0.3.3... [INFO] testing fasten-0.3.3 against beta-2022-02-22 for beta-1.60-1 [INFO] extracting crate fasten 0.3.3 into /workspace/builds/worker-24/source [INFO] validating manifest of crates.io crate fasten 0.3.3 on toolchain beta-2022-02-22 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate fasten 0.3.3 [INFO] finished tweaking crates.io crate fasten 0.3.3 [INFO] tweaked toml for crates.io crate fasten 0.3.3 written to /workspace/builds/worker-24/source/Cargo.toml [INFO] crate crates.io crate fasten 0.3.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded owning_ref v0.2.4 [INFO] [stderr] Downloaded bam v0.1.4 [INFO] [stderr] Downloaded multiqueue v0.3.2 [INFO] [stderr] Downloaded parking_lot v0.3.8 [INFO] [stderr] Downloaded parking_lot_core v0.2.14 [INFO] [stderr] Downloaded statistical v0.1.1 [INFO] [stderr] Downloaded smallvec v0.3.4 [INFO] [stderr] Downloaded fastq v0.6.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-24/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-24/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f1f8eeb3eb77b6bef0ff2777be52ca5961fc79abbe420fed4d8becb63b29e4f9 [INFO] running `Command { std: "docker" "start" "-a" "f1f8eeb3eb77b6bef0ff2777be52ca5961fc79abbe420fed4d8becb63b29e4f9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f1f8eeb3eb77b6bef0ff2777be52ca5961fc79abbe420fed4d8becb63b29e4f9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f1f8eeb3eb77b6bef0ff2777be52ca5961fc79abbe420fed4d8becb63b29e4f9", kill_on_drop: false }` [INFO] [stdout] f1f8eeb3eb77b6bef0ff2777be52ca5961fc79abbe420fed4d8becb63b29e4f9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-24/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-24/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 287384740c26ce498a593bc7a6cdc0a1b9367ba2b159a1e20e1f74f267efed50 [INFO] running `Command { std: "docker" "start" "-a" "287384740c26ce498a593bc7a6cdc0a1b9367ba2b159a1e20e1f74f267efed50", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.101 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling cc v1.0.69 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling rustc-serialize v0.3.24 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling owning_ref v0.2.4 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling futures v0.1.31 [INFO] [stderr] Compiling smallvec v0.3.4 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling crossbeam v0.2.12 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling smallvec v0.6.14 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling lz4-sys v1.9.2 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling thread-id v3.3.0 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling threadpool v1.8.1 [INFO] [stderr] Compiling parking_lot_core v0.2.14 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling parking_lot v0.3.8 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling multiqueue v0.3.2 [INFO] [stderr] Compiling bam v0.1.4 [INFO] [stderr] Compiling num-bigint v0.1.44 [INFO] [stderr] Compiling num-rational v0.1.42 [INFO] [stderr] Compiling num v0.1.42 [INFO] [stderr] Compiling statistical v0.1.1 [INFO] [stderr] Compiling lz4 v1.23.2 [INFO] [stderr] Compiling fastq v0.6.0 [INFO] [stderr] Compiling fasten v0.3.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 23.24s [INFO] running `Command { std: "docker" "inspect" "287384740c26ce498a593bc7a6cdc0a1b9367ba2b159a1e20e1f74f267efed50", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "287384740c26ce498a593bc7a6cdc0a1b9367ba2b159a1e20e1f74f267efed50", kill_on_drop: false }` [INFO] [stdout] 287384740c26ce498a593bc7a6cdc0a1b9367ba2b159a1e20e1f74f267efed50 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-24/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-24/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 54d98f32fa7e158dbcbd1d5c0041c6d2668b74e2786b0015ac6c8db5396e461e [INFO] running `Command { std: "docker" "start" "-a" "54d98f32fa7e158dbcbd1d5c0041c6d2668b74e2786b0015ac6c8db5396e461e", kill_on_drop: false }` [INFO] [stderr] Compiling fasten v0.3.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.35s [INFO] running `Command { std: "docker" "inspect" "54d98f32fa7e158dbcbd1d5c0041c6d2668b74e2786b0015ac6c8db5396e461e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "54d98f32fa7e158dbcbd1d5c0041c6d2668b74e2786b0015ac6c8db5396e461e", kill_on_drop: false }` [INFO] [stdout] 54d98f32fa7e158dbcbd1d5c0041c6d2668b74e2786b0015ac6c8db5396e461e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-24/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-24/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 1290c2ec11b1b52b93a9cfd4c1759c46c41759994e24f1e214e13c934f0fc82e [INFO] running `Command { std: "docker" "start" "-a" "1290c2ec11b1b52b93a9cfd4c1759c46c41759994e24f1e214e13c934f0fc82e", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten-30cabca0ab001246) [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test io::fastq::test_the_careful_reader ... ok [INFO] [stdout] test io::seq::test_new_seq ... ok [INFO] [stdout] test io::fastq::test_the_fast_reader ... ok [INFO] [stdout] test io::seq::test_cleanable ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_clean-7b7ab7eec1055090) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_combine-5a62df1a7600ac73) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_convert-52784a1ec8cf163e) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_kmer-2cdf3dc900278963) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_metrics-91435f8ba527922d) [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_mutate-d5e5b339628f7f68) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_pe-f16ca5b2c1265925) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_progress-3b09af6cf7781692) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_quality_filter-b79240367cc412e7) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_randomize-d100fecb3d632c59) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_regex-2cac978da2cf7c9c) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_replace-0e339933208e1ffd) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_sample-343812cac5dd9976) [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_shuffle-f487bf82ef1f4d54) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_straighten-45454635090b2838) [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_trim-1637099c5a520362) [INFO] [stdout] test challenge_dataset ... ok [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_validate-7d0710063df3f960) [INFO] [stdout] [INFO] [stderr] Doc-tests fasten [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "1290c2ec11b1b52b93a9cfd4c1759c46c41759994e24f1e214e13c934f0fc82e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1290c2ec11b1b52b93a9cfd4c1759c46c41759994e24f1e214e13c934f0fc82e", kill_on_drop: false }` [INFO] [stdout] 1290c2ec11b1b52b93a9cfd4c1759c46c41759994e24f1e214e13c934f0fc82e