[INFO] cloning repository https://github.com/zaeleus/noodles-fpkm [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles-fpkm" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-fpkm", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-fpkm'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ac8e247a9b65a13d7fe98acccf63a9e46752422d [INFO] testing zaeleus/noodles-fpkm against beta-2022-02-22 for beta-1.60-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-fpkm" "/workspace/builds/worker-6/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/zaeleus/noodles-fpkm on toolchain beta-2022-02-22 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/zaeleus/noodles-fpkm [INFO] finished tweaking git repo https://github.com/zaeleus/noodles-fpkm [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-fpkm written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate git repo https://github.com/zaeleus/noodles-fpkm already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/zaeleus/noodles.git` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] fb5b40381083d53e0d19915f2afcc7c1fe93596756836f085dbba6b759a37d48 [INFO] running `Command { std: "docker" "start" "-a" "fb5b40381083d53e0d19915f2afcc7c1fe93596756836f085dbba6b759a37d48", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fb5b40381083d53e0d19915f2afcc7c1fe93596756836f085dbba6b759a37d48", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fb5b40381083d53e0d19915f2afcc7c1fe93596756836f085dbba6b759a37d48", kill_on_drop: false }` [INFO] [stdout] fb5b40381083d53e0d19915f2afcc7c1fe93596756836f085dbba6b759a37d48 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cad222931f71c930d38a7fcfaf7a6b33f1f4a1097d5af350da25b2b911118ebd [INFO] running `Command { std: "docker" "start" "-a" "cad222931f71c930d38a7fcfaf7a6b33f1f4a1097d5af350da25b2b911118ebd", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling lazy_static v1.3.0 [INFO] [stderr] Compiling serde v1.0.94 [INFO] [stderr] Compiling cc v1.0.37 [INFO] [stderr] Compiling regex v1.1.9 [INFO] [stderr] Compiling ucd-util v0.1.3 [INFO] [stderr] Compiling log v0.4.7 [INFO] [stderr] Compiling utf8-ranges v1.0.3 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bit-vec v0.6.1 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling atty v0.2.12 [INFO] [stderr] Compiling regex-automata v0.1.7 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling regex-syntax v0.6.8 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling miniz-sys v0.1.12 [INFO] [stderr] Compiling aho-corasick v0.7.4 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling flate2 v1.0.9 [INFO] [stderr] Compiling bstr v0.2.2 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling noodles v0.1.0 (https://github.com/zaeleus/noodles.git?rev=699e849407ff5b8f445926d08757531135d262a6#699e8494) [INFO] [stderr] Compiling noodles-fpkm v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 14.87s [INFO] running `Command { std: "docker" "inspect" "cad222931f71c930d38a7fcfaf7a6b33f1f4a1097d5af350da25b2b911118ebd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cad222931f71c930d38a7fcfaf7a6b33f1f4a1097d5af350da25b2b911118ebd", kill_on_drop: false }` [INFO] [stdout] cad222931f71c930d38a7fcfaf7a6b33f1f4a1097d5af350da25b2b911118ebd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cc12dd2649fe6febd97c244601bce2096b6a9d9d3836c05f1455dc4ffb106842 [INFO] running `Command { std: "docker" "start" "-a" "cc12dd2649fe6febd97c244601bce2096b6a9d9d3836c05f1455dc4ffb106842", kill_on_drop: false }` [INFO] [stderr] Compiling noodles-fpkm v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: this method call resolves to `<&[T; N] as IntoIterator>::into_iter` (due to backwards compatibility), but will resolve to <[T; N] as IntoIterator>::into_iter in Rust 2021 [INFO] [stdout] --> src/lib.rs:107:18 [INFO] [stdout] | [INFO] [stdout] 107 | features.into_iter().cloned().collect() [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(array_into_iter)]` on by default [INFO] [stdout] = warning: this changes meaning in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `.iter()` instead of `.into_iter()` to avoid ambiguity [INFO] [stdout] | [INFO] [stdout] 107 | features.iter().cloned().collect() [INFO] [stdout] | ~~~~ [INFO] [stdout] help: or use `IntoIterator::into_iter(..)` instead of `.into_iter()` to explicitly iterate by value [INFO] [stdout] | [INFO] [stdout] 107 | IntoIterator::into_iter(features).cloned().collect() [INFO] [stdout] | ++++++++++++++++++++++++ ~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.11s [INFO] running `Command { std: "docker" "inspect" "cc12dd2649fe6febd97c244601bce2096b6a9d9d3836c05f1455dc4ffb106842", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cc12dd2649fe6febd97c244601bce2096b6a9d9d3836c05f1455dc4ffb106842", kill_on_drop: false }` [INFO] [stdout] cc12dd2649fe6febd97c244601bce2096b6a9d9d3836c05f1455dc4ffb106842 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 59b830cbd5f2a98a5b273a3ccfd63d2cb8f1a6535473a58591e3a59fc7b48db6 [INFO] running `Command { std: "docker" "start" "-a" "59b830cbd5f2a98a5b273a3ccfd63d2cb8f1a6535473a58591e3a59fc7b48db6", kill_on_drop: false }` [INFO] [stderr] warning: this method call resolves to `<&[T; N] as IntoIterator>::into_iter` (due to backwards compatibility), but will resolve to <[T; N] as IntoIterator>::into_iter in Rust 2021 [INFO] [stderr] --> src/lib.rs:107:18 [INFO] [stderr] | [INFO] [stderr] 107 | features.into_iter().cloned().collect() [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(array_into_iter)]` on by default [INFO] [stderr] = warning: this changes meaning in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `.iter()` instead of `.into_iter()` to avoid ambiguity [INFO] [stderr] | [INFO] [stderr] 107 | features.iter().cloned().collect() [INFO] [stderr] | ~~~~ [INFO] [stderr] help: or use `IntoIterator::into_iter(..)` instead of `.into_iter()` to explicitly iterate by value [INFO] [stderr] | [INFO] [stderr] 107 | IntoIterator::into_iter(features).cloned().collect() [INFO] [stderr] | ++++++++++++++++++++++++ ~ [INFO] [stderr] [INFO] [stderr] warning: `noodles-fpkm` (lib test) generated 1 warning [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/noodles_fpkm-966d0a8ccaa3ee7e) [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test counts::tests::test_insert_count ... ok [INFO] [stdout] test counts::tests::test_parse_count ... ok [INFO] [stdout] test counts::tests::test_parse_name ... ok [INFO] [stdout] test tests::test_calculate_fpkm ... ok [INFO] [stdout] test tests::test_calculate_fpkms ... ok [INFO] [stdout] test tests::test_calculate_fpkms_is_ordered_by_feature_id ... ok [INFO] [stdout] test tests::test_calculate_tpm ... ok [INFO] [stdout] test counts::tests::test_read_counts_with_duplicate_identifiers ... ok [INFO] [stdout] test tests::test_calculate_fpkms_with_missing_feature ... ok [INFO] [stdout] test tests::test_sum_nonoverlapping_interval_lengths ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/noodles_fpkm-5db878352768c49d) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test tests::test_write_expressions ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles-fpkm [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test src/features.rs - features::Feature::len (line 23) ... ok [INFO] [stdout] test src/features.rs - features::merge_intervals (line 56) ... ok [INFO] [stdout] test src/counts.rs - counts::sum_counts (line 109) ... ok [INFO] [stdout] test src/counts.rs - counts::read_counts (line 28) ... ok [INFO] [stdout] test src/features.rs - features::read_features (line 103) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.77s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "59b830cbd5f2a98a5b273a3ccfd63d2cb8f1a6535473a58591e3a59fc7b48db6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "59b830cbd5f2a98a5b273a3ccfd63d2cb8f1a6535473a58591e3a59fc7b48db6", kill_on_drop: false }` [INFO] [stdout] 59b830cbd5f2a98a5b273a3ccfd63d2cb8f1a6535473a58591e3a59fc7b48db6