[INFO] cloning repository https://github.com/zaeleus/noodles-count-features
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles-count-features" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f7fde83e4561080c49df65f57b18c5497570bcae
[INFO] testing zaeleus/noodles-count-features against beta-2022-02-22 for beta-1.60-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features" "/workspace/builds/worker-15/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-15/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/zaeleus/noodles-count-features on toolchain beta-2022-02-22
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/zaeleus/noodles-count-features
[INFO] finished tweaking git repo https://github.com/zaeleus/noodles-count-features
[INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-count-features written to /workspace/builds/worker-15/source/Cargo.toml
[INFO] crate git repo https://github.com/zaeleus/noodles-count-features already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating git repository `https://github.com/zaeleus/interval-tree.git`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-bgzf v0.8.0
[INFO] [stderr]   Downloaded libdeflater v0.7.5
[INFO] [stderr]   Downloaded libc v0.2.115
[INFO] [stderr]   Downloaded noodles-sam v0.11.0
[INFO] [stderr]   Downloaded noodles-bam v0.14.0
[INFO] [stderr]   Downloaded git-testament-derive v0.1.13
[INFO] [stderr]   Downloaded git-testament v0.2.1
[INFO] [stderr]   Downloaded noodles-core v0.3.4
[INFO] [stderr]   Downloaded mimalloc v0.1.27
[INFO] [stderr]   Downloaded noodles v0.18.0
[INFO] [stderr]   Downloaded noodles-csi v0.4.3
[INFO] [stderr]   Downloaded libdeflate-sys v0.7.5
[INFO] [stderr]   Downloaded libmimalloc-sys v0.1.23
[INFO] [stderr]   Downloaded noodles-gff v0.4.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 668994e8032f5c93833b2eec25c8b147d8f0c68475a1c36465848bf11d70fc43
[INFO] running `Command { std: "docker" "start" "-a" "668994e8032f5c93833b2eec25c8b147d8f0c68475a1c36465848bf11d70fc43", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "668994e8032f5c93833b2eec25c8b147d8f0c68475a1c36465848bf11d70fc43", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "668994e8032f5c93833b2eec25c8b147d8f0c68475a1c36465848bf11d70fc43", kill_on_drop: false }`
[INFO] [stdout] 668994e8032f5c93833b2eec25c8b147d8f0c68475a1c36465848bf11d70fc43
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] da44e53050f09a2182164b73e40f0b8e0840a7562e06e215492af1871e23298e
[INFO] running `Command { std: "docker" "start" "-a" "da44e53050f09a2182164b73e40f0b8e0840a7562e06e215492af1871e23298e", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.115
[INFO] [stderr]    Compiling cc v1.0.72
[INFO] [stderr]    Compiling futures-core v0.3.19
[INFO] [stderr]    Compiling pin-project-lite v0.2.8
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling futures-sink v0.3.19
[INFO] [stderr]    Compiling futures-channel v0.3.19
[INFO] [stderr]    Compiling futures-task v0.3.19
[INFO] [stderr]    Compiling crc32fast v1.3.1
[INFO] [stderr]    Compiling futures-util v0.3.19
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling futures-io v0.3.19
[INFO] [stderr]    Compiling slab v0.4.5
[INFO] [stderr]    Compiling bytes v1.1.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.36
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]    Compiling hashbrown v0.11.2
[INFO] [stderr]    Compiling num_threads v0.1.3
[INFO] [stderr]    Compiling time-macros v0.2.3
[INFO] [stderr]    Compiling itoa v1.0.1
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling once_cell v1.9.0
[INFO] [stderr]    Compiling anyhow v1.0.53
[INFO] [stderr]    Compiling no-std-compat v0.4.1
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling smallvec v1.8.0
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling textwrap v0.14.2
[INFO] [stderr]    Compiling interval-tree v0.2.0 (https://github.com/zaeleus/interval-tree.git?rev=e303d7254d53de5c418d6079d4b66c30c10958d4#e303d725)
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling indexmap v1.8.0
[INFO] [stderr]    Compiling tracing-core v0.1.21
[INFO] [stderr]    Compiling sharded-slab v0.1.4
[INFO] [stderr]    Compiling noodles-gff v0.4.0
[INFO] [stderr]    Compiling os_str_bytes v6.0.0
[INFO] [stderr]    Compiling thread_local v1.1.4
[INFO] [stderr]    Compiling tracing-log v0.1.2
[INFO] [stderr]    Compiling quote v1.0.15
[INFO] [stderr]    Compiling tracing-subscriber v0.3.7
[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling tokio v1.15.0
[INFO] [stderr]    Compiling clap v3.0.13
[INFO] [stderr]    Compiling libdeflate-sys v0.7.5
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.23
[INFO] [stderr]    Compiling time v0.3.7
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling mimalloc v0.1.27
[INFO] [stderr]    Compiling libdeflater v0.7.5
[INFO] [stderr]    Compiling futures v0.3.19
[INFO] [stderr]    Compiling tokio-util v0.6.9
[INFO] [stderr]    Compiling noodles-bgzf v0.8.0
[INFO] [stderr]    Compiling noodles-sam v0.11.0
[INFO] [stderr]    Compiling noodles-csi v0.4.3
[INFO] [stderr]    Compiling noodles-core v0.3.4
[INFO] [stderr]    Compiling noodles-bam v0.14.0
[INFO] [stderr]    Compiling git-testament-derive v0.1.13
[INFO] [stderr]    Compiling tracing-attributes v0.1.18
[INFO] [stderr]    Compiling git-testament v0.2.1
[INFO] [stderr]    Compiling noodles v0.18.0
[INFO] [stderr]    Compiling tracing v0.1.29
[INFO] [stderr]    Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 20.27s
[INFO] running `Command { std: "docker" "inspect" "da44e53050f09a2182164b73e40f0b8e0840a7562e06e215492af1871e23298e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "da44e53050f09a2182164b73e40f0b8e0840a7562e06e215492af1871e23298e", kill_on_drop: false }`
[INFO] [stdout] da44e53050f09a2182164b73e40f0b8e0840a7562e06e215492af1871e23298e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2858f63cc70761be7696c27940038ddfa089aabb42b2c4ee978d285e9fc6e1a4
[INFO] running `Command { std: "docker" "start" "-a" "2858f63cc70761be7696c27940038ddfa089aabb42b2c4ee978d285e9fc6e1a4", kill_on_drop: false }`
[INFO] [stderr]    Compiling tokio-macros v1.7.0
[INFO] [stderr]    Compiling tokio v1.15.0
[INFO] [stderr]    Compiling tokio-util v0.6.9
[INFO] [stderr]    Compiling noodles-bgzf v0.8.0
[INFO] [stderr]    Compiling noodles-sam v0.11.0
[INFO] [stderr]    Compiling noodles-csi v0.4.3
[INFO] [stderr]    Compiling noodles-core v0.3.4
[INFO] [stderr]    Compiling noodles-bam v0.14.0
[INFO] [stderr]    Compiling noodles v0.18.0
[INFO] [stderr]    Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 14.94s
[INFO] running `Command { std: "docker" "inspect" "2858f63cc70761be7696c27940038ddfa089aabb42b2c4ee978d285e9fc6e1a4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2858f63cc70761be7696c27940038ddfa089aabb42b2c4ee978d285e9fc6e1a4", kill_on_drop: false }`
[INFO] [stdout] 2858f63cc70761be7696c27940038ddfa089aabb42b2c4ee978d285e9fc6e1a4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 80a5133a14aef3817e5e5b34ce420f15181948e33418a5431785d2bf7434d467
[INFO] running `Command { std: "docker" "start" "-a" "80a5133a14aef3817e5e5b34ce420f15181948e33418a5431785d2bf7434d467", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.08s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/noodles_squab-a45a992ac0e0511d)
[INFO] [stdout] 
[INFO] [stdout] running 27 tests
[INFO] [stdout] test commands::tests::test_from_str ... ok
[INFO] [stdout] test count::context::tests::test_add ... ok
[INFO] [stdout] test count::context::tests::test_add_event ... ok
[INFO] [stdout] test count::reader::tests::test_read_counts ... ok
[INFO] [stdout] test count::writer::tests::test_write_counts ... ok
[INFO] [stdout] test count::tests::test_get_reference ... ok
[INFO] [stdout] test feature::tests::test_end ... ok
[INFO] [stdout] test count::writer::tests::test_write_stats ... ok
[INFO] [stdout] test feature::tests::test_is_empty ... ok
[INFO] [stdout] test feature::tests::test_len ... ok
[INFO] [stdout] test feature::tests::test_reference_sequence_name ... ok
[INFO] [stdout] test feature::tests::test_start ... ok
[INFO] [stdout] test feature::tests::test_strand ... ok
[INFO] [stdout] test match_intervals::tests::test_next ... ok
[INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms ... ok
[INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms_with_missing_feature ... ok
[INFO] [stdout] test normalization::method::tests::test_from_str ... ok
[INFO] [stdout] test normalization::tests::test_merge_features ... ok
[INFO] [stdout] test normalization::tests::test_sum_nonoverlapping_feature_lengths ... ok
[INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms ... ok
[INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms_with_missing_feature ... ok
[INFO] [stdout] test normalization::writer::tests::test_write_values ... ok
[INFO] [stdout] test record_pairs::pair_position::tests::test_mate ... ok
[INFO] [stdout] test record_pairs::pair_position::tests::test_try_from_flag ... ok
[INFO] [stdout] test record_pairs::tests::test_key ... ok
[INFO] [stdout] test record_pairs::tests::test_mate_key ... ok
[INFO] [stdout] test tests::test_read_features ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 27 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/noodles_squab-53f899c3fed44c1a)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/quantify_single_end_forward_test.rs (/opt/rustwide/target/debug/deps/quantify_single_end_forward_test-f95dc54d13204163)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test test_quantify_with_single_end_forward_sample ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests noodles-squab
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "80a5133a14aef3817e5e5b34ce420f15181948e33418a5431785d2bf7434d467", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "80a5133a14aef3817e5e5b34ce420f15181948e33418a5431785d2bf7434d467", kill_on_drop: false }`
[INFO] [stdout] 80a5133a14aef3817e5e5b34ce420f15181948e33418a5431785d2bf7434d467