[INFO] cloning repository https://github.com/robsyme/rustalind [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/robsyme/rustalind" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frobsyme%2Frustalind", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frobsyme%2Frustalind'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 264d21ca5f12caf9ce4156f1d721874a4cd24e12 [INFO] testing robsyme/rustalind against beta-2022-02-22 for beta-1.60-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frobsyme%2Frustalind" "/workspace/builds/worker-11/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-11/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/robsyme/rustalind on toolchain beta-2022-02-22 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/robsyme/rustalind [INFO] finished tweaking git repo https://github.com/robsyme/rustalind [INFO] tweaked toml for git repo https://github.com/robsyme/rustalind written to /workspace/builds/worker-11/source/Cargo.toml [INFO] crate git repo https://github.com/robsyme/rustalind already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 93b8e48e27e08dc7d78d8bb815f857d9bf13bb96e4c76ea5ffe4a9dbf0666551 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "93b8e48e27e08dc7d78d8bb815f857d9bf13bb96e4c76ea5ffe4a9dbf0666551", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "93b8e48e27e08dc7d78d8bb815f857d9bf13bb96e4c76ea5ffe4a9dbf0666551", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "93b8e48e27e08dc7d78d8bb815f857d9bf13bb96e4c76ea5ffe4a9dbf0666551", kill_on_drop: false }` [INFO] [stdout] 93b8e48e27e08dc7d78d8bb815f857d9bf13bb96e4c76ea5ffe4a9dbf0666551 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 027740b1d9da1e766a9e50987d6bff52b357adde4a3f3c7daebecfebcc38dbbb [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "027740b1d9da1e766a9e50987d6bff52b357adde4a3f3c7daebecfebcc38dbbb", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.49 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling rustalind v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::convert::TryFrom` [INFO] [stdout] --> src/seq/nuc.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::convert::TryFrom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `prev` [INFO] [stdout] --> src/hamm.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | prev: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `Pairer` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/hamm.rs:5:10 [INFO] [stdout] | [INFO] [stdout] 5 | #[derive(Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 12.74s [INFO] running `Command { std: "docker" "inspect" "027740b1d9da1e766a9e50987d6bff52b357adde4a3f3c7daebecfebcc38dbbb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "027740b1d9da1e766a9e50987d6bff52b357adde4a3f3c7daebecfebcc38dbbb", kill_on_drop: false }` [INFO] [stdout] 027740b1d9da1e766a9e50987d6bff52b357adde4a3f3c7daebecfebcc38dbbb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 96cd26bd1a645b84fe634f8787e7396273a4cef3c735bfadd8bfe71a6fbe0d84 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "96cd26bd1a645b84fe634f8787e7396273a4cef3c735bfadd8bfe71a6fbe0d84", kill_on_drop: false }` [INFO] [stderr] Compiling rustalind v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::convert::TryFrom` [INFO] [stdout] --> src/seq/nuc.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::convert::TryFrom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `prev` [INFO] [stdout] --> src/hamm.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | prev: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `Pairer` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/hamm.rs:5:10 [INFO] [stdout] | [INFO] [stdout] 5 | #[derive(Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.29s [INFO] running `Command { std: "docker" "inspect" "96cd26bd1a645b84fe634f8787e7396273a4cef3c735bfadd8bfe71a6fbe0d84", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "96cd26bd1a645b84fe634f8787e7396273a4cef3c735bfadd8bfe71a6fbe0d84", kill_on_drop: false }` [INFO] [stdout] 96cd26bd1a645b84fe634f8787e7396273a4cef3c735bfadd8bfe71a6fbe0d84 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] edb32ec6fc4d9b2da6bcae9104333b32a736691f38ca0ef787f099c6b816e38c [INFO] running `Command { std: "docker" "start" "-a" "edb32ec6fc4d9b2da6bcae9104333b32a736691f38ca0ef787f099c6b816e38c", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `std::convert::TryFrom` [INFO] [stderr] --> src/seq/nuc.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use std::convert::TryFrom; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `rustalind` (lib) generated 1 warning [INFO] [stderr] warning: field is never read: `prev` [INFO] [stderr] --> src/hamm.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | prev: Option, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] note: `Pairer` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stderr] --> src/hamm.rs:5:10 [INFO] [stderr] | [INFO] [stderr] 5 | #[derive(Debug)] [INFO] [stderr] | ^^^^^ [INFO] [stderr] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: `rustalind` (bin "rustalind" test) generated 1 warning [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.02s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rustalind-08150fe00ac5ef3d) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rustalind-9e20494d177025cd) [INFO] [stdout] running 12 tests [INFO] [stdout] test io::tests::test_gc_counting ... ok [INFO] [stdout] test seq::codon::tests::test_table_integration ... ok [INFO] [stdout] test seq::nuc::tests::dna_bit_or ... ok [INFO] [stdout] test seq::nuc::tests::dna_bit_xor ... ok [INFO] [stdout] test seq::nuc::tests::dna_complement ... ok [INFO] [stdout] test seq::nuc::tests::dna_from_chars ... ok [INFO] [stdout] test seq::translation::tests::test_get ... ok [INFO] [stdout] test seq::nuc::tests::dna_from_string ... ok [INFO] [stdout] test seq::nuc::tests::dna_bit_and ... ok [INFO] [stdout] test io::tests::blank_fasta ... ok [INFO] [stdout] test io::tests::erroneous_fasta ... ok [INFO] [stdout] test seq::nuc::tests::dna_as_tagged_enums ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test hamm::tests::basic_distance ... ok [INFO] [stdout] test revc::tests::test_reverse_complement ... ok [INFO] [stdout] test prot::tests::test_translate ... ok [INFO] [stdout] test rna::tests::test_translation ... ok [INFO] [stdout] test dna::tests::count_basic_occurrences ... ok [INFO] [stderr] Doc-tests rustalind [INFO] [stdout] test fib::tests::test_basic_recurrence ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "edb32ec6fc4d9b2da6bcae9104333b32a736691f38ca0ef787f099c6b816e38c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "edb32ec6fc4d9b2da6bcae9104333b32a736691f38ca0ef787f099c6b816e38c", kill_on_drop: false }` [INFO] [stdout] edb32ec6fc4d9b2da6bcae9104333b32a736691f38ca0ef787f099c6b816e38c