[INFO] cloning repository https://github.com/mooreryan/bio_ballyhoo
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mooreryan/bio_ballyhoo" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4895a9c2f64f3443dbc032002a5d6a371a1062d0
[INFO] testing mooreryan/bio_ballyhoo against beta-2022-02-22 for beta-1.60-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo" "/workspace/builds/worker-1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mooreryan/bio_ballyhoo on toolchain beta-2022-02-22
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/mooreryan/bio_ballyhoo
[INFO] finished tweaking git repo https://github.com/mooreryan/bio_ballyhoo
[INFO] tweaked toml for git repo https://github.com/mooreryan/bio_ballyhoo written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] crate git repo https://github.com/mooreryan/bio_ballyhoo already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f0240e6da7aa9323ec234ece47ab509668660f94f5c9d99f1c2f883bed9261e5
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f0240e6da7aa9323ec234ece47ab509668660f94f5c9d99f1c2f883bed9261e5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f0240e6da7aa9323ec234ece47ab509668660f94f5c9d99f1c2f883bed9261e5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f0240e6da7aa9323ec234ece47ab509668660f94f5c9d99f1c2f883bed9261e5", kill_on_drop: false }`
[INFO] [stdout] f0240e6da7aa9323ec234ece47ab509668660f94f5c9d99f1c2f883bed9261e5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b5963111bfe837d596362cd31013a69d865490d9a0585f2ef1c95f98116b363b
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "b5963111bfe837d596362cd31013a69d865490d9a0585f2ef1c95f98116b363b", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling syn v1.0.60
[INFO] [stderr]    Compiling serde_derive v1.0.123
[INFO] [stderr]    Compiling serde v1.0.123
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]    Compiling once_cell v1.5.2
[INFO] [stderr]    Compiling byteorder v1.4.2
[INFO] [stderr]    Compiling regex-syntax v0.6.22
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]    Compiling getrandom v0.2.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling number_prefix v0.3.0
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling indexmap v1.6.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling thread_local v1.1.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling terminal_size v0.1.16
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_core v0.6.2
[INFO] [stderr]    Compiling aho-corasick v0.7.15
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rand_chacha v0.3.0
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling rand v0.8.3
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling regex v1.4.3
[INFO] [stderr]    Compiling console v0.14.0
[INFO] [stderr]    Compiling indicatif v0.15.0
[INFO] [stderr]    Compiling structopt-derive v0.4.14
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling enum-map v0.6.4
[INFO] [stderr]    Compiling bio-types v0.10.0
[INFO] [stderr]    Compiling snafu v0.6.10
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.15
[INFO] [stderr]    Compiling multimap v0.8.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling csv v1.1.5
[INFO] [stderr]    Compiling structopt v0.3.21
[INFO] [stderr]    Compiling make_reads v0.1.0 (/opt/rustwide/workdir/make_reads)
[INFO] [stderr]    Compiling msa_pairwise v0.2.0 (/opt/rustwide/workdir/msa_pairwise_identity)
[INFO] [stderr]    Compiling derep v0.1.0 (/opt/rustwide/workdir/derep)
[INFO] [stderr]    Compiling simple_headers v0.1.0 (/opt/rustwide/workdir/simple_headers)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 15s
[INFO] running `Command { std: "docker" "inspect" "b5963111bfe837d596362cd31013a69d865490d9a0585f2ef1c95f98116b363b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b5963111bfe837d596362cd31013a69d865490d9a0585f2ef1c95f98116b363b", kill_on_drop: false }`
[INFO] [stdout] b5963111bfe837d596362cd31013a69d865490d9a0585f2ef1c95f98116b363b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 19844641ce7c6899814a7eccee0eebb3d0604c802730e6c162e96d86f1f1e416
[INFO] running `Command { std: "docker" "start" "-a" "19844641ce7c6899814a7eccee0eebb3d0604c802730e6c162e96d86f1f1e416", kill_on_drop: false }`
[INFO] [stderr]    Compiling msa_pairwise v0.2.0 (/opt/rustwide/workdir/msa_pairwise_identity)
[INFO] [stderr]    Compiling simple_headers v0.1.0 (/opt/rustwide/workdir/simple_headers)
[INFO] [stderr]    Compiling make_reads v0.1.0 (/opt/rustwide/workdir/make_reads)
[INFO] [stderr]    Compiling derep v0.1.0 (/opt/rustwide/workdir/derep)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 4.65s
[INFO] running `Command { std: "docker" "inspect" "19844641ce7c6899814a7eccee0eebb3d0604c802730e6c162e96d86f1f1e416", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "19844641ce7c6899814a7eccee0eebb3d0604c802730e6c162e96d86f1f1e416", kill_on_drop: false }`
[INFO] [stdout] 19844641ce7c6899814a7eccee0eebb3d0604c802730e6c162e96d86f1f1e416
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] e06e52d241b596029b1f82b59878b6d1094fcb7945eba5a38ddb0e7739128b3c
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "e06e52d241b596029b1f82b59878b6d1094fcb7945eba5a38ddb0e7739128b3c", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.12s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/derep-7b2fd07a4df05b69)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/derep-18566d6e6781ce58)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/make_reads-a76d8dec3070ed27)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/make_reads-b81569a1fbe4eaa1)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/msa_pairwise-6672d8ca6da32f54)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/msa_pairwise-3ac5d9ff4d7f2375)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/simple_headers-26c9fc3503969eb2)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests derep
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests make_reads
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests msa_pairwise
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "e06e52d241b596029b1f82b59878b6d1094fcb7945eba5a38ddb0e7739128b3c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e06e52d241b596029b1f82b59878b6d1094fcb7945eba5a38ddb0e7739128b3c", kill_on_drop: false }`
[INFO] [stdout] e06e52d241b596029b1f82b59878b6d1094fcb7945eba5a38ddb0e7739128b3c