[INFO] cloning repository https://github.com/amsesk/protein2contig
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/amsesk/protein2contig" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d2c1b32d69b4e995f0f4fa3bfc6735cd60222d8d
[INFO] testing amsesk/protein2contig against beta-2022-02-22 for beta-1.60-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig" "/workspace/builds/worker-28/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-28/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/amsesk/protein2contig on toolchain beta-2022-02-22
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/amsesk/protein2contig
[INFO] finished tweaking git repo https://github.com/amsesk/protein2contig
[INFO] tweaked toml for git repo https://github.com/amsesk/protein2contig written to /workspace/builds/worker-28/source/Cargo.toml
[INFO] crate git repo https://github.com/amsesk/protein2contig already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/rust-bio/rust-bio`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 27710ba97f11e8e32b8be9ef38cdda678d53d4c119c078ec9d548cbce2ef3e29
[INFO] running `Command { std: "docker" "start" "-a" "27710ba97f11e8e32b8be9ef38cdda678d53d4c119c078ec9d548cbce2ef3e29", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "27710ba97f11e8e32b8be9ef38cdda678d53d4c119c078ec9d548cbce2ef3e29", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "27710ba97f11e8e32b8be9ef38cdda678d53d4c119c078ec9d548cbce2ef3e29", kill_on_drop: false }`
[INFO] [stdout] 27710ba97f11e8e32b8be9ef38cdda678d53d4c119c078ec9d548cbce2ef3e29
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b289fb10eca130f84444e1533612fd12834ddaae1fed96b14ab886060c215c75
[INFO] running `Command { std: "docker" "start" "-a" "b289fb10eca130f84444e1533612fd12834ddaae1fed96b14ab886060c215c75", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.12
[INFO] [stderr]    Compiling syn v1.0.20
[INFO] [stderr]    Compiling serde v1.0.110
[INFO] [stderr]    Compiling libc v0.2.70
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling ryu v1.0.4
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling regex-syntax v0.6.17
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling unicode-width v0.1.7
[INFO] [stderr]    Compiling fixedbitset v0.1.9
[INFO] [stderr]    Compiling itoa v0.4.5
[INFO] [stderr]    Compiling bio v0.30.1-alpha.0 (https://github.com/rust-bio/rust-bio#0fe46244)
[INFO] [stderr]    Compiling bit-vec v0.6.2
[INFO] [stderr]    Compiling os_str_bytes v2.3.1
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling termcolor v1.1.0
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling proc-macro-error-attr v0.4.12
[INFO] [stderr]    Compiling proc-macro-error v0.4.12
[INFO] [stderr]    Compiling indexmap v1.3.2
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling quote v1.0.4
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling regex v1.3.7
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.110
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.1
[INFO] [stderr]    Compiling snafu v0.6.8
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling bio-types v0.6.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling clap v3.0.0-beta.1
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling protein2contig v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 24.56s
[INFO] running `Command { std: "docker" "inspect" "b289fb10eca130f84444e1533612fd12834ddaae1fed96b14ab886060c215c75", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b289fb10eca130f84444e1533612fd12834ddaae1fed96b14ab886060c215c75", kill_on_drop: false }`
[INFO] [stdout] b289fb10eca130f84444e1533612fd12834ddaae1fed96b14ab886060c215c75
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9756087fdf8cf6e7bd2971ff0887da29fa5ef2dee7cdaca7e8e96f4911f6ca62
[INFO] running `Command { std: "docker" "start" "-a" "9756087fdf8cf6e7bd2971ff0887da29fa5ef2dee7cdaca7e8e96f4911f6ca62", kill_on_drop: false }`
[INFO] [stderr]    Compiling protein2contig v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.46s
[INFO] running `Command { std: "docker" "inspect" "9756087fdf8cf6e7bd2971ff0887da29fa5ef2dee7cdaca7e8e96f4911f6ca62", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9756087fdf8cf6e7bd2971ff0887da29fa5ef2dee7cdaca7e8e96f4911f6ca62", kill_on_drop: false }`
[INFO] [stdout] 9756087fdf8cf6e7bd2971ff0887da29fa5ef2dee7cdaca7e8e96f4911f6ca62
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] d1729b48460ed2d2a3daee2cc2c5504b4dd016eaaf7b92257727018491ec09b8
[INFO] running `Command { std: "docker" "start" "-a" "d1729b48460ed2d2a3daee2cc2c5504b4dd016eaaf7b92257727018491ec09b8", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.04s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/protein2contig-011801e203c48f34)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/protein2contig-bc88fc73bed4583a)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests protein2contig
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "d1729b48460ed2d2a3daee2cc2c5504b4dd016eaaf7b92257727018491ec09b8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d1729b48460ed2d2a3daee2cc2c5504b4dd016eaaf7b92257727018491ec09b8", kill_on_drop: false }`
[INFO] [stdout] d1729b48460ed2d2a3daee2cc2c5504b4dd016eaaf7b92257727018491ec09b8