[INFO] cloning repository https://github.com/MarcoMernberger/mbf_bam [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MarcoMernberger/mbf_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMarcoMernberger%2Fmbf_bam", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMarcoMernberger%2Fmbf_bam'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 34e16cfeccb834cd3fa04ebf52845b699f518678 [INFO] testing MarcoMernberger/mbf_bam against beta-2022-02-22 for beta-1.60-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMarcoMernberger%2Fmbf_bam" "/workspace/builds/worker-45/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-45/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/MarcoMernberger/mbf_bam on toolchain beta-2022-02-22 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/MarcoMernberger/mbf_bam [INFO] finished tweaking git repo https://github.com/MarcoMernberger/mbf_bam [INFO] tweaked toml for git repo https://github.com/MarcoMernberger/mbf_bam written to /workspace/builds/worker-45/source/Cargo.toml [INFO] crate git repo https://github.com/MarcoMernberger/mbf_bam already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded serde v1.0.90 [INFO] [stderr] Downloaded bio-types v0.5.1 [INFO] [stderr] Downloaded bytecount v0.3.2 [INFO] [stderr] Downloaded bv v0.10.0 [INFO] [stderr] Downloaded pyo3cls v0.6.0 [INFO] [stderr] Downloaded serde_derive v1.0.90 [INFO] [stderr] Downloaded pyo3-derive-backend v0.6.0 [INFO] [stderr] Downloaded fs-utils v1.1.0 [INFO] [stderr] Downloaded ndarray v0.12.1 [INFO] [stderr] Downloaded clang-sys v0.28.0 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded ctor v0.1.8 [INFO] [stderr] Downloaded bio v0.25.0 [INFO] [stderr] Downloaded csv v1.0.6 [INFO] [stderr] Downloaded rust-htslib v0.24.0 [INFO] [stderr] Downloaded pyo3 v0.6.0 [INFO] [stderr] Downloaded lzma-sys v0.1.14 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-45/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-45/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] aa5b8d5446dbee499d6c19fe09bc80e55f13da7bd9e12413fd176cdba995c9d3 [INFO] running `Command { std: "docker" "start" "-a" "aa5b8d5446dbee499d6c19fe09bc80e55f13da7bd9e12413fd176cdba995c9d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "aa5b8d5446dbee499d6c19fe09bc80e55f13da7bd9e12413fd176cdba995c9d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aa5b8d5446dbee499d6c19fe09bc80e55f13da7bd9e12413fd176cdba995c9d3", kill_on_drop: false }` [INFO] [stdout] aa5b8d5446dbee499d6c19fe09bc80e55f13da7bd9e12413fd176cdba995c9d3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-45/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-45/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e7be60614b60c5d28dd063d877036c07224021ce4105135b9f9dbeddd0ac8772 [INFO] running `Command { std: "docker" "start" "-a" "e7be60614b60c5d28dd063d877036c07224021ce4105135b9f9dbeddd0ac8772", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling syn v0.15.30 [INFO] [stderr] Compiling cc v1.0.35 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling serde v1.0.90 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling num-traits v0.2.6 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling pkg-config v0.3.14 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling termcolor v1.0.4 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Compiling num-complex v0.2.1 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling ryu v0.2.7 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling proc-macro-hack-impl v0.4.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling failure_derive v0.1.5 [INFO] [stderr] Compiling num-integer v0.1.39 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling bit-vec v0.5.1 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling adler32 v1.0.4 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling bitflags v0.9.1 [INFO] [stderr] Compiling spin v0.5.0 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling log v0.4.6 [INFO] [stderr] Compiling unicode-normalization v0.1.8 [INFO] [stderr] Compiling backtrace v0.3.15 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling itertools v0.8.0 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Compiling rustc-hash v1.0.1 [INFO] [stderr] Compiling crossbeam-epoch v0.3.1 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling fs-utils v1.1.0 [INFO] [stderr] Compiling crossbeam-deque v0.2.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling miniz_oxide v0.3.5 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling bit-set v0.5.1 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling libloading v0.5.0 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling backtrace-sys v0.1.28 [INFO] [stderr] Compiling idna v0.1.5 [INFO] [stderr] Compiling proc-macro-hack v0.4.1 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling which v3.1.0 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling num_cpus v1.10.0 [INFO] [stderr] Compiling flate2 v1.0.13 [INFO] [stderr] Compiling url v1.7.2 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling csv-core v0.1.5 [INFO] [stderr] Compiling mashup v0.1.9 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling pyo3-derive-backend v0.6.0 [INFO] [stderr] Compiling synstructure v0.10.1 [INFO] [stderr] Compiling env_logger v0.6.1 [INFO] [stderr] Compiling serde_derive v1.0.90 [INFO] [stderr] Compiling ctor v0.1.8 [INFO] [stderr] Compiling ghost v0.1.0 [INFO] [stderr] Compiling inventory-impl v0.1.3 [INFO] [stderr] Compiling pyo3 v0.6.0 [INFO] [stderr] Compiling pyo3cls v0.6.0 [INFO] [stderr] Compiling failure v0.1.5 [INFO] [stderr] Compiling inventory v0.1.3 [INFO] [stderr] error: failed to run custom build command for `pyo3 v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/pyo3-7ca8d7046ae94464/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] Error: pyo3 requires a nightly or dev version of Rust. [INFO] [stderr] Installed version is: 1.60.0-beta.1 (2022-02-22). Minimum required: 1.34.0-nightly (2019-02-06). [INFO] [stderr] thread 'main' panicked at 'Aborting compilation due to incompatible compiler.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/pyo3-0.6.0/build.rs:540:17 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ce86ec49bc - std::backtrace_rs::backtrace::libunwind::trace::h02555d7ca8aa068a [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x55ce86ec49bc - std::backtrace_rs::backtrace::trace_unsynchronized::h8555a46024147da8 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55ce86ec49bc - std::sys_common::backtrace::_print_fmt::h4c7f50b4f105da1e [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x55ce86ec49bc - ::fmt::ha305a40dbc030444 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x55ce86ee5a7c - core::fmt::write::hadd15acf4d6ce273 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/fmt/mod.rs:1190:17 [INFO] [stderr] 5: 0x55ce86ec0a98 - std::io::Write::write_fmt::h0f87f6c0c21ec48a [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/io/mod.rs:1657:15 [INFO] [stderr] 6: 0x55ce86ec6a47 - std::sys_common::backtrace::_print::h0dd5c0810675bd8c [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x55ce86ec6a47 - std::sys_common::backtrace::print::h20a2155fa0a22ca6 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x55ce86ec6a47 - std::panicking::default_hook::{{closure}}::habb3b6f3ccdfe00a [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x55ce86ec670f - std::panicking::default_hook::h1c5cf4d5063a38e4 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x55ce86ec719a - std::panicking::rust_panic_with_hook::hb5de7a3072d2cf59 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x55ce86e07f88 - std::panicking::begin_panic::{{closure}}::h7368f8626e04cedb [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:617:9 [INFO] [stderr] 12: 0x55ce86dfeb99 - std::sys_common::backtrace::__rust_end_short_backtrace::hd56d00446dafb5e4 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x55ce86e07f03 - std::panicking::begin_panic::h2108c7c79754fcd9 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:616:12 [INFO] [stderr] 14: 0x55ce86cdab9c - build_script_build::check_rustc_version::h9daf2a3b13176330 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/pyo3-0.6.0/build.rs:540:17 [INFO] [stderr] 15: 0x55ce86cdaff4 - build_script_build::main::h6fe06b826acd9b57 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/pyo3-0.6.0/build.rs:564:5 [INFO] [stderr] 16: 0x55ce86cea132 - core::ops::function::FnOnce::call_once::hef0d246b2b55710b [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55ce86ceccea - std::sys_common::backtrace::__rust_begin_short_backtrace::h9301b040d036b231 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stderr] 18: 0x55ce86ce2a56 - std::rt::lang_start::{{closure}}::h8343c4f532d5b648 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/rt.rs:145:18 [INFO] [stderr] 19: 0x55ce86ec40a1 - core::ops::function::impls:: for &F>::call_once::h9e134bb161d17658 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55ce86ec40a1 - std::panicking::try::do_call::h7f361d911648db1a [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:492:40 [INFO] [stderr] 21: 0x55ce86ec40a1 - std::panicking::try::hbe441b12f8ff00e7 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:456:19 [INFO] [stderr] 22: 0x55ce86ec40a1 - std::panic::catch_unwind::h12066b7ab56d7459 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panic.rs:137:14 [INFO] [stderr] 23: 0x55ce86ec40a1 - std::rt::lang_start_internal::{{closure}}::h901c86e61467dcde [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/rt.rs:128:48 [INFO] [stderr] 24: 0x55ce86ec40a1 - std::panicking::try::do_call::h1817b5f028d90a8c [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:492:40 [INFO] [stderr] 25: 0x55ce86ec40a1 - std::panicking::try::hd5afeaf2f0454960 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:456:19 [INFO] [stderr] 26: 0x55ce86ec40a1 - std::panic::catch_unwind::h13348562ae6426ca [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panic.rs:137:14 [INFO] [stderr] 27: 0x55ce86ec40a1 - std::rt::lang_start_internal::hf194c7db73fedcb2 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/rt.rs:128:20 [INFO] [stderr] 28: 0x55ce86ce2a20 - std::rt::lang_start::h19c90dbe81a37615 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/rt.rs:144:17 [INFO] [stderr] 29: 0x55ce86cdc3cc - main [INFO] [stderr] 30: 0x7f15628480b3 - __libc_start_main [INFO] [stderr] 31: 0x55ce86cd418e - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "e7be60614b60c5d28dd063d877036c07224021ce4105135b9f9dbeddd0ac8772", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e7be60614b60c5d28dd063d877036c07224021ce4105135b9f9dbeddd0ac8772", kill_on_drop: false }` [INFO] [stdout] e7be60614b60c5d28dd063d877036c07224021ce4105135b9f9dbeddd0ac8772