[INFO] cloning repository https://github.com/HopedWall/GFAtoVCF
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/HopedWall/GFAtoVCF" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8960fd42cada8e94d81c8391405e0df59045a60a
[INFO] testing HopedWall/GFAtoVCF against beta-2022-02-22 for beta-1.60-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF" "/workspace/builds/worker-10/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-10/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/HopedWall/GFAtoVCF on toolchain beta-2022-02-22
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/HopedWall/GFAtoVCF
[INFO] finished tweaking git repo https://github.com/HopedWall/GFAtoVCF
[INFO] tweaked toml for git repo https://github.com/HopedWall/GFAtoVCF written to /workspace/builds/worker-10/source/Cargo.toml
[INFO] crate git repo https://github.com/HopedWall/GFAtoVCF already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 02abf7ffc3a0f16a0543e860820a4ffdac8f68af1bf82aa9544ef8a2dee1463e
[INFO] running `Command { std: "docker" "start" "-a" "02abf7ffc3a0f16a0543e860820a4ffdac8f68af1bf82aa9544ef8a2dee1463e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "02abf7ffc3a0f16a0543e860820a4ffdac8f68af1bf82aa9544ef8a2dee1463e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "02abf7ffc3a0f16a0543e860820a4ffdac8f68af1bf82aa9544ef8a2dee1463e", kill_on_drop: false }`
[INFO] [stdout] 02abf7ffc3a0f16a0543e860820a4ffdac8f68af1bf82aa9544ef8a2dee1463e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7e7b6aace613801254cf7d50d56e0532d40eb03520c63699cdecdd95a7cc2004
[INFO] running `Command { std: "docker" "start" "-a" "7e7b6aace613801254cf7d50d56e0532d40eb03520c63699cdecdd95a7cc2004", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.112
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling arrayvec v0.5.2
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling json v0.12.4
[INFO] [stderr]    Compiling indexmap v1.8.0
[INFO] [stderr]    Compiling priority-queue v1.2.1
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling gfa v0.2.3
[INFO] [stderr]    Compiling handlegraph v0.2.0
[INFO] [stderr]    Compiling gfa_to_vcf v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 8.49s
[INFO] running `Command { std: "docker" "inspect" "7e7b6aace613801254cf7d50d56e0532d40eb03520c63699cdecdd95a7cc2004", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7e7b6aace613801254cf7d50d56e0532d40eb03520c63699cdecdd95a7cc2004", kill_on_drop: false }`
[INFO] [stdout] 7e7b6aace613801254cf7d50d56e0532d40eb03520c63699cdecdd95a7cc2004
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1898c0994ee01b7827a551135882d56f2a484e730f0d5862a8902f604055e1c8
[INFO] running `Command { std: "docker" "start" "-a" "1898c0994ee01b7827a551135882d56f2a484e730f0d5862a8902f604055e1c8", kill_on_drop: false }`
[INFO] [stderr]    Compiling gfa_to_vcf v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1.70s
[INFO] running `Command { std: "docker" "inspect" "1898c0994ee01b7827a551135882d56f2a484e730f0d5862a8902f604055e1c8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1898c0994ee01b7827a551135882d56f2a484e730f0d5862a8902f604055e1c8", kill_on_drop: false }`
[INFO] [stdout] 1898c0994ee01b7827a551135882d56f2a484e730f0d5862a8902f604055e1c8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 31488c567f6bbec5f7e17f79b93c6633c3450434b3bd152f9cc953afdcb1a771
[INFO] running `Command { std: "docker" "start" "-a" "31488c567f6bbec5f7e17f79b93c6633c3450434b3bd152f9cc953afdcb1a771", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.14s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/gfa_to_vcf-23633e3f8439a3a4)
[INFO] [stdout] 
[INFO] [stdout] running 19 tests
[INFO] [stdout] test bubble_detection::tests::find_bfs_paths_2 ... ok
[INFO] [stdout] test bubble_detection::tests::find_bfs_1 ... ok
[INFO] [stdout] test bubble_detection::tests::find_bubbles_2 ... ok
[INFO] [stdout] test bubble_detection::tests::find_bubbles_1 ... ok
[INFO] [stdout] test bubble_detection::tests::test_bfs_distances ... ok
[INFO] [stdout] test bubble_detection::tests::test_dist_to_num_nodes ... ok
[INFO] [stdout] test bubble_detection::tests::test_bfs ... ok
[INFO] [stdout] test bubble_detection::tests::test_bubble_detection ... ok
[INFO] [stdout] test variant_identification::tests::whole_script_1 ... ok
[INFO] [stdout] test bubble_detection::tests::test_path_to_steps ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_1 ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_5 ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_3 ... ok
[INFO] [stdout] test variant_identification::tests::test_variant_detection ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_5_alt ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_4_alt ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_4 ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_2 ... ok
[INFO] [stdout] test variant_identification::tests::whole_script_2 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 19 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "31488c567f6bbec5f7e17f79b93c6633c3450434b3bd152f9cc953afdcb1a771", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "31488c567f6bbec5f7e17f79b93c6633c3450434b3bd152f9cc953afdcb1a771", kill_on_drop: false }`
[INFO] [stdout] 31488c567f6bbec5f7e17f79b93c6633c3450434b3bd152f9cc953afdcb1a771