[INFO] cloning repository https://github.com/Ebedthan/sabreur
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Ebedthan/sabreur" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEbedthan%2Fsabreur", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEbedthan%2Fsabreur'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9974c5dddd191969d5cbd673ad130a8f439166ef
[INFO] testing Ebedthan/sabreur against beta-2022-02-22 for beta-1.60-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEbedthan%2Fsabreur" "/workspace/builds/worker-7/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Ebedthan/sabreur on toolchain beta-2022-02-22
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Ebedthan/sabreur
[INFO] finished tweaking git repo https://github.com/Ebedthan/sabreur
[INFO] tweaked toml for git repo https://github.com/Ebedthan/sabreur written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] crate git repo https://github.com/Ebedthan/sabreur already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded colored v1.9.3
[INFO] [stderr]   Downloaded plotters-backend v0.3.2
[INFO] [stderr]   Downloaded cast v0.2.7
[INFO] [stderr]   Downloaded plotters-svg v0.3.1
[INFO] [stderr]   Downloaded tinytemplate v1.2.1
[INFO] [stderr]   Downloaded ndarray v0.14.0
[INFO] [stderr]   Downloaded statrs v0.13.0
[INFO] [stderr]   Downloaded getset v0.0.9
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded exitcode v1.1.2
[INFO] [stderr]   Downloaded generic-array v0.13.3
[INFO] [stderr]   Downloaded criterion-plot v0.4.3
[INFO] [stderr]   Downloaded bstr v0.2.16
[INFO] [stderr]   Downloaded anyhow v1.0.41
[INFO] [stderr]   Downloaded array-macro v1.0.5
[INFO] [stderr]   Downloaded nalgebra v0.19.0
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded fern v0.5.9
[INFO] [stderr]   Downloaded bio-types v0.11.0
[INFO] [stderr]   Downloaded criterion v0.3.4
[INFO] [stderr]   Downloaded bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]   Downloaded sysinfo v0.20.3
[INFO] [stderr]   Downloaded lzma-sys v0.1.17
[INFO] [stderr]   Downloaded triple_accel v0.3.4
[INFO] [stderr]   Downloaded enum-map-derive v0.4.6
[INFO] [stderr]   Downloaded enum-map v0.6.4
[INFO] [stderr]   Downloaded plotters v0.3.1
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded ordered-float v1.1.1
[INFO] [stderr]   Downloaded alga v0.9.3
[INFO] [stderr]   Downloaded half v1.7.1
[INFO] [stderr]   Downloaded serde_cbor v0.11.1
[INFO] [stderr]   Downloaded matrixmultiply v0.2.4
[INFO] [stderr]   Downloaded num-complex v0.2.4
[INFO] [stderr]   Downloaded semver v1.0.3
[INFO] [stderr]   Downloaded bgzip v0.2.1
[INFO] [stderr]   Downloaded niffler v2.3.2
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded bio v0.35.0
[INFO] [stderr]   Downloaded rand_distr v0.2.2
[INFO] [stderr]   Downloaded strum v0.20.0
[INFO] [stderr]   Downloaded strum_macros v0.20.1
[INFO] [stderr]   Downloaded bzip2 v0.4.3
[INFO] [stderr]   Downloaded xz2 v0.1.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c5f7fd3ce2d055afe8f1c9b6f23f6d2ef07d3a699b9c3a2beb31a50c29233163
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "c5f7fd3ce2d055afe8f1c9b6f23f6d2ef07d3a699b9c3a2beb31a50c29233163", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c5f7fd3ce2d055afe8f1c9b6f23f6d2ef07d3a699b9c3a2beb31a50c29233163", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c5f7fd3ce2d055afe8f1c9b6f23f6d2ef07d3a699b9c3a2beb31a50c29233163", kill_on_drop: false }`
[INFO] [stdout] c5f7fd3ce2d055afe8f1c9b6f23f6d2ef07d3a699b9c3a2beb31a50c29233163
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f13d1d028b2060634c4c7fd2cc5045bc2af2b3e24ddf87f2e0395c7ccd67e2c0
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f13d1d028b2060634c4c7fd2cc5045bc2af2b3e24ddf87f2e0395c7ccd67e2c0", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.101
[INFO] [stderr]    Compiling syn v1.0.73
[INFO] [stderr]    Compiling ndarray v0.14.0
[INFO] [stderr]    Compiling bio v0.35.0
[INFO] [stderr]    Compiling sysinfo v0.20.3
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling strum v0.20.0
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling flate2 v1.0.20
[INFO] [stderr]    Compiling time v0.1.43
[INFO] [stderr]    Compiling colored v1.9.3
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling bzip2 v0.4.3
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling fern v0.5.9
[INFO] [stderr]    Compiling rand_distr v0.2.2
[INFO] [stderr]    Compiling nalgebra v0.19.0
[INFO] [stderr]    Compiling serde_derive v1.0.126
[INFO] [stderr]    Compiling thiserror-impl v1.0.26
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling enum-map v0.6.4
[INFO] [stderr]    Compiling thiserror v1.0.26
[INFO] [stderr]    Compiling bgzip v0.2.1
[INFO] [stderr]    Compiling bio-types v0.11.0
[INFO] [stderr]    Compiling niffler v2.3.2
[INFO] [stderr]    Compiling serde v1.0.126
[INFO] [stderr]    Compiling statrs v0.13.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.16
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling sabreur v0.4.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 15s
[INFO] running `Command { std: "docker" "inspect" "f13d1d028b2060634c4c7fd2cc5045bc2af2b3e24ddf87f2e0395c7ccd67e2c0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f13d1d028b2060634c4c7fd2cc5045bc2af2b3e24ddf87f2e0395c7ccd67e2c0", kill_on_drop: false }`
[INFO] [stdout] f13d1d028b2060634c4c7fd2cc5045bc2af2b3e24ddf87f2e0395c7ccd67e2c0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 57251fc7f1b80473a1d2afafa8d5191b4441e0e69e01209aa8805a3ca6536fa4
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "57251fc7f1b80473a1d2afafa8d5191b4441e0e69e01209aa8805a3ca6536fa4", kill_on_drop: false }`
[INFO] [stderr]    Compiling semver v1.0.3
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling plotters v0.3.1
[INFO] [stderr]    Compiling serde_json v1.0.64
[INFO] [stderr]    Compiling serde_cbor v0.11.1
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling cast v0.2.7
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling criterion-plot v0.4.3
[INFO] [stderr]    Compiling criterion v0.3.4
[INFO] [stderr]    Compiling sabreur v0.4.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 35.25s
[INFO] running `Command { std: "docker" "inspect" "57251fc7f1b80473a1d2afafa8d5191b4441e0e69e01209aa8805a3ca6536fa4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "57251fc7f1b80473a1d2afafa8d5191b4441e0e69e01209aa8805a3ca6536fa4", kill_on_drop: false }`
[INFO] [stdout] 57251fc7f1b80473a1d2afafa8d5191b4441e0e69e01209aa8805a3ca6536fa4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 0e59c8d97a58cfc2ce6a5f87004ca15fc9b72bf0ac2aaf497389ec2520cb3c60
[INFO] running `Command { std: "docker" "start" "-a" "0e59c8d97a58cfc2ce6a5f87004ca15fc9b72bf0ac2aaf497389ec2520cb3c60", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.13s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/sabreur-b3cc8ebf2f9798db)
[INFO] [stdout] running 22 tests
[INFO] [stdout] test utils::tests::test_bc_cmp_mismatch_not_ok ... ok
[INFO] [stdout] test utils::tests::test_bc_cmp_mismatch_ok ... ok
[INFO] [stdout] test utils::tests::test_bc_cmp_ok ... ok
[INFO] [stdout] test utils::tests::test_read_file ... ok
[INFO] [stdout] test utils::tests::test_to_niffler_level ... ok
[INFO] [stdout] test utils::tests::test_se_fq_demux ... ok
[INFO] [stdout] test utils::tests::test_split_by_tab ... ok
[INFO] [stdout] test utils::tests::test_to_compression_ext ... ok
[INFO] [stdout] test utils::tests::test_se_fa_demux_m1 ... ok
[INFO] [stdout] test utils::tests::test_se_fa_demux_m2 ... ok
[INFO] [stdout] test utils::tests::test_se_fq_demux_m1 ... ok
[INFO] [stdout] test utils::tests::test_to_niffler_format ... ok
[INFO] [stdout] test utils::tests::test_create_relpath_from ... ok
[INFO] [stdout] test utils::tests::test_bc_cmp_not_ok ... ok
[INFO] [stdout] test utils::tests::test_get_file_type ... ok
[INFO] [stdout] test utils::tests::test_write_to_fq_is_ok ... ok
[INFO] [stdout] test utils::tests::test_write_to_fa_is_ok ... ok
[INFO] [stdout] test utils::tests::test_se_fa_demux_trim ... ok
[INFO] [stdout] test utils::tests::test_se_fq_demux_m2 ... ok
[INFO] [stdout] test utils::tests::test_se_fa_demux ... ok
[INFO] [stdout] test utils::tests::test_read_file_content_is_ok ... ok
[INFO] [stdout] test utils::tests::test_split_by_tab_not_ok - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 22 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.16s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "0e59c8d97a58cfc2ce6a5f87004ca15fc9b72bf0ac2aaf497389ec2520cb3c60", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0e59c8d97a58cfc2ce6a5f87004ca15fc9b72bf0ac2aaf497389ec2520cb3c60", kill_on_drop: false }`
[INFO] [stdout] 0e59c8d97a58cfc2ce6a5f87004ca15fc9b72bf0ac2aaf497389ec2520cb3c60