[INFO] fetching crate segul 0.12.0... [INFO] testing segul-0.12.0 against 1.59.0 for beta-1.60-1 [INFO] extracting crate segul 0.12.0 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate segul 0.12.0 on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate segul 0.12.0 [INFO] finished tweaking crates.io crate segul 0.12.0 [INFO] tweaked toml for crates.io crate segul 0.12.0 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate crates.io crate segul 0.12.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6587feae9438137ef85e6f26c3be67105c720c2e2b5f8d40344ff44705df5d39 [INFO] running `Command { std: "docker" "start" "-a" "6587feae9438137ef85e6f26c3be67105c720c2e2b5f8d40344ff44705df5d39", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6587feae9438137ef85e6f26c3be67105c720c2e2b5f8d40344ff44705df5d39", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6587feae9438137ef85e6f26c3be67105c720c2e2b5f8d40344ff44705df5d39", kill_on_drop: false }` [INFO] [stdout] 6587feae9438137ef85e6f26c3be67105c720c2e2b5f8d40344ff44705df5d39 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 57817fb00601b42901c311f4ffb24e116e14d92c63d3561fb62bf9e93e6b871e [INFO] running `Command { std: "docker" "start" "-a" "57817fb00601b42901c311f4ffb24e116e14d92c63d3561fb62bf9e93e6b871e", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.98 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling serde_derive v1.0.127 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling serde v1.0.127 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling radium v0.5.3 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling traitobject v0.1.0 [INFO] [stderr] Compiling lexical-core v0.7.6 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Compiling linked-hash-map v0.5.4 [INFO] [stderr] Compiling anyhow v1.0.42 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling smallvec v1.6.1 [INFO] [stderr] Compiling serde_json v1.0.66 [INFO] [stderr] Compiling funty v1.1.0 [INFO] [stderr] Compiling arrayvec v0.5.2 [INFO] [stderr] Compiling wyz v0.2.0 [INFO] [stderr] Compiling nodrop v0.1.14 [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling static_assertions v1.1.0 [INFO] [stderr] Compiling tap v1.0.1 [INFO] [stderr] Compiling dtoa v0.4.8 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling hashbrown v0.9.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling zeroize v1.4.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling arc-swap v0.4.8 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling log-mdc v0.1.0 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling alphanumeric-sort v1.4.3 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling lock_api v0.4.4 [INFO] [stderr] Compiling yaml-rust v0.4.5 [INFO] [stderr] Compiling unsafe-any v0.4.2 [INFO] [stderr] Compiling instant v0.1.10 [INFO] [stderr] Compiling typemap v0.3.3 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling indexmap v1.6.2 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling nom v6.2.1 [INFO] [stderr] Compiling ahash v0.7.4 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling bitvec v0.19.5 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling terminal_size v0.1.17 [INFO] [stderr] Compiling time v0.1.43 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling parking_lot_core v0.8.3 [INFO] [stderr] Compiling thread-id v3.3.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling num-format v0.4.0 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling parking_lot v0.11.1 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling regex v1.4.6 [INFO] [stderr] Compiling ordered-float v2.7.0 [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling tempfile v3.2.0 [INFO] [stderr] Compiling console v0.14.1 [INFO] [stderr] Compiling indicatif v0.16.2 [INFO] [stderr] Compiling dialoguer v0.8.0 [INFO] [stderr] Compiling thiserror-impl v1.0.26 [INFO] [stderr] Compiling derivative v2.2.0 [INFO] [stderr] Compiling thiserror v1.0.26 [INFO] [stderr] Compiling serde_yaml v0.8.17 [INFO] [stderr] Compiling serde-value v0.7.0 [INFO] [stderr] Compiling log4rs v1.0.0 [INFO] [stderr] Compiling segul v0.12.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 29.00s [INFO] running `Command { std: "docker" "inspect" "57817fb00601b42901c311f4ffb24e116e14d92c63d3561fb62bf9e93e6b871e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "57817fb00601b42901c311f4ffb24e116e14d92c63d3561fb62bf9e93e6b871e", kill_on_drop: false }` [INFO] [stdout] 57817fb00601b42901c311f4ffb24e116e14d92c63d3561fb62bf9e93e6b871e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 67f9665afb76317a686f57a9a65d8464bf84e8ebfb3f097ed4425da010372c81 [INFO] running `Command { std: "docker" "start" "-a" "67f9665afb76317a686f57a9a65d8464bf84e8ebfb3f097ed4425da010372c81", kill_on_drop: false }` [INFO] [stderr] Compiling segul v0.12.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 5.61s [INFO] running `Command { std: "docker" "inspect" "67f9665afb76317a686f57a9a65d8464bf84e8ebfb3f097ed4425da010372c81", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "67f9665afb76317a686f57a9a65d8464bf84e8ebfb3f097ed4425da010372c81", kill_on_drop: false }` [INFO] [stdout] 67f9665afb76317a686f57a9a65d8464bf84e8ebfb3f097ed4425da010372c81 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] a939115bd5af84e9451e1a83c266d1b89e901dea2841968fbc7c07e2beebf8bc [INFO] running `Command { std: "docker" "start" "-a" "a939115bd5af84e9451e1a83c266d1b89e901dea2841968fbc7c07e2beebf8bc", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.07s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/segul-cd9241baa158210d) [INFO] [stdout] [INFO] [stdout] running 94 tests [INFO] [stdout] test core::translate::tests::test_translating_mesodinium_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_lowercase ... ok [INFO] [stdout] test core::translate::tests::test_translating_candid_sr1_gracil ... ok [INFO] [stdout] test core::translate::tests::test_translating_bacteria_simple ... ok [INFO] [stdout] test core::translate::tests::test_scenedesmus_mtdna_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_echiflatworms_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_cepha_simple ... ok [INFO] [stdout] test core::concat::test::test_get_gaps ... ok [INFO] [stdout] test cli::filter::test::test_min_taxa_output_dir ... ok [INFO] [stdout] test core::translate::tests::test_chlorophycean_mtdna_simple ... ok [INFO] [stdout] test cli::filter::test::test_min_taxa ... ok [INFO] [stdout] test core::translate::tests::test_alt_flatworm_mtdna_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_rhadop_mtdna_simple ... ok [INFO] [stdout] test core::rename::test::test_rename_seq ... ok [INFO] [stdout] test core::translate::tests::test_invert_mtdna_real_sequence ... ok [INFO] [stdout] test core::translate::tests::test_translating_stdcode ... ok [INFO] [stdout] test core::translate::tests::test_translating_altyeast_nu_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_peritrich_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_pachy_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_ascidian_mtdna_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_cildashex_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_euplotid_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_mold_etal_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_thrasutochytrium_mtdna_simple ... ok [INFO] [stdout] test core::translate::tests::test_translation_yestmtdna ... ok [INFO] [stdout] test core::extract::tests::test_get_matrix_id ... ok [INFO] [stdout] test core::translate::tests::test_translating_with_missing ... ok [INFO] [stdout] test core::translate::tests::test_translation_vertmtdna_simple ... ok [INFO] [stdout] test helper::sequence::test::test_parsing_input_fmt ... ok [INFO] [stdout] test helper::finder::test::get_files_test ... ok [INFO] [stdout] test helper::stats::test::dna_count_test ... ok [INFO] [stdout] test helper::stats::test::filter_min_tax_test ... ok [INFO] [stdout] test helper::stats::test::pattern_count_test ... ok [INFO] [stdout] test parser::delimited::test::test_parse_csv ... ok [INFO] [stdout] test helper::stats::test::test_site_counts ... ok [INFO] [stdout] test helper::utils::test::time_parsing_test ... ok [INFO] [stdout] test helper::stats::test::count_parsimony_gap_test ... ok [INFO] [stdout] test parser::delimited::test::test_parse_tsv ... ok [INFO] [stdout] test parser::fasta::test::check_isnot_alignment_test ... ok [INFO] [stdout] test parser::fasta::test::check_is_alignment_test ... ok [INFO] [stdout] test parser::fasta::test::read_fasta_simple_test ... ok [INFO] [stdout] test helper::alphabet::test::test_check_invalid_dna ... ok [INFO] [stdout] test parser::fasta::test::interleaved_fas_test ... ok [INFO] [stdout] test helper::alphabet::test::test_check_valid_dna ... ok [INFO] [stdout] test core::translate::tests::test_trematode_mtdna_simple ... ok [INFO] [stdout] test core::extract::tests::test_get_matrix_re ... ok [INFO] [stdout] test helper::filenames::tests::test_create_output_fname ... ok [INFO] [stdout] test core::translate::tests::test_translation_simple ... ok [INFO] [stdout] test helper::sequence::test::test_alignment_simple ... ok [INFO] [stdout] test helper::stats::test::get_site_stats_test ... ok [INFO] [stdout] test parser::fasta::test::simple_aa_fas_test ... ok [INFO] [stdout] test helper::stats::test::count_variable_sites_test ... ok [INFO] [stdout] test core::translate::tests::test_translation_invertmtdna_simple ... ok [INFO] [stdout] test helper::stats::test::count_parsimony_test ... ok [INFO] [stdout] test parser::phylip::test::test_read_interleave_phylip_id ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_parsing_object ... ok [INFO] [stdout] test parser::phylip::test::test_parse_phylip_header ... ok [INFO] [stdout] test parser::phylip::test::test_phylip_simple_aa ... ok [INFO] [stdout] test parser::phylip::test::test_read_int_phylip_whitespaces ... ok [INFO] [stdout] test parser::phylip::test::test_read_interleave_phylip ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_reading_tabulated ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_sequence ... ok [INFO] [stdout] test parser::nexus::test::test_regex_command ... ok [INFO] [stdout] test parser::phylip::test::test_parse_matrix_interleave_phylip ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_parse_interleave_res ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_parse_ntax ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_reading_complete ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_reading_simple ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_simple_aa ... ok [INFO] [stdout] test parser::nexus::test::test_check_match_ntax ... ok [INFO] [stdout] test core::translate::tests::test_translation_yestmtdna_simple ... ok [INFO] [stdout] test parser::phylip::test::test_read_phylip_simple ... ok [INFO] [stdout] test writer::sequences::test::test_chunk_seq ... ok [INFO] [stdout] test parser::phylip::test::test_read_phylip_whitespace ... ok [INFO] [stdout] test writer::sequences::test::test_matrix_int ... ok [INFO] [stdout] test core::extract::tests::test_match_id ... ok [INFO] [stdout] test writer::sequences::test::test_insert_whitespaces ... ok [INFO] [stdout] test core::translate::tests::test_translating_with_gaps ... ok [INFO] [stdout] test helper::finder::test::id_test ... ok [INFO] [stdout] test core::filter::test::test_min_pinf ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_parse_interleave ... ok [INFO] [stdout] test core::concat::test::test_concat_nexus ... ok [INFO] [stdout] test core::concat::test::test_concat_partition ... ok [INFO] [stdout] test core::concat::test::test_concat_check_result ... ok [INFO] [stdout] test helper::finder::test::check_empty_files_test - should panic ... ok [INFO] [stdout] test parser::nexus::test::test_check_invalid_nexus - should panic ... ok [INFO] [stdout] test parser::nexus::test::test_check_match_ntax_panic - should panic ... ok [INFO] [stdout] test helper::alphabet::test::test_check_invalid_dna_panic - should panic ... ok [INFO] [stdout] test core::concat::test::test_get_alignment_panic - should panic ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_id_duplicate_panic - should panic ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_space_panic - should panic ... ok [INFO] [stdout] test parser::phylip::test::test_read_interleave_phylip_panic - should panic ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_duplicate_panic - should panic ... ok [INFO] [stdout] test parser::phylip::test::test_read_phylip_invalid - should panic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 94 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.39s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "a939115bd5af84e9451e1a83c266d1b89e901dea2841968fbc7c07e2beebf8bc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a939115bd5af84e9451e1a83c266d1b89e901dea2841968fbc7c07e2beebf8bc", kill_on_drop: false }` [INFO] [stdout] a939115bd5af84e9451e1a83c266d1b89e901dea2841968fbc7c07e2beebf8bc