[INFO] fetching crate rnafamprob 0.1.0... [INFO] testing rnafamprob-0.1.0 against 1.59.0 for beta-1.60-1 [INFO] extracting crate rnafamprob 0.1.0 into /workspace/builds/worker-11/source [INFO] validating manifest of crates.io crate rnafamprob 0.1.0 on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate rnafamprob 0.1.0 [INFO] finished tweaking crates.io crate rnafamprob 0.1.0 [INFO] tweaked toml for crates.io crate rnafamprob 0.1.0 written to /workspace/builds/worker-11/source/Cargo.toml [INFO] crate crates.io crate rnafamprob 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d8b01f9bdb45a0a880921354b520e79887d4a68348775176b30aa230d8841c0b [INFO] running `Command { std: "docker" "start" "-a" "d8b01f9bdb45a0a880921354b520e79887d4a68348775176b30aa230d8841c0b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d8b01f9bdb45a0a880921354b520e79887d4a68348775176b30aa230d8841c0b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d8b01f9bdb45a0a880921354b520e79887d4a68348775176b30aa230d8841c0b", kill_on_drop: false }` [INFO] [stdout] d8b01f9bdb45a0a880921354b520e79887d4a68348775176b30aa230d8841c0b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fa961494695e5d465b9b824681330dc7a411b46b16ce0fb5973d4b3ac64070f7 [INFO] running `Command { std: "docker" "start" "-a" "fa961494695e5d465b9b824681330dc7a411b46b16ce0fb5973d4b3ac64070f7", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling ucd-util v0.1.5 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling void v1.0.2 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling lazy_static v0.1.16 [INFO] [stderr] Compiling fnv v1.0.6 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling unicode-width v0.1.6 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling bio-seq-algos v0.1.12 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling unreachable v1.0.0 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling rna-ss-params v0.1.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling time v0.1.42 [INFO] [stderr] Compiling regex-automata v0.1.8 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling bio v0.20.3 [INFO] [stderr] Compiling rna-algos v0.1.10 [INFO] [stderr] Compiling rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:49:72 [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 30.18s [INFO] running `Command { std: "docker" "inspect" "fa961494695e5d465b9b824681330dc7a411b46b16ce0fb5973d4b3ac64070f7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fa961494695e5d465b9b824681330dc7a411b46b16ce0fb5973d4b3ac64070f7", kill_on_drop: false }` [INFO] [stdout] fa961494695e5d465b9b824681330dc7a411b46b16ce0fb5973d4b3ac64070f7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cc13fe31cbb2cd25151cb63024085d6d5ad6c4f48a0e566544950502441defc6 [INFO] running `Command { std: "docker" "start" "-a" "cc13fe31cbb2cd25151cb63024085d6d5ad6c4f48a0e566544950502441defc6", kill_on_drop: false }` [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:49:72 [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:49:72 [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.11s [INFO] running `Command { std: "docker" "inspect" "cc13fe31cbb2cd25151cb63024085d6d5ad6c4f48a0e566544950502441defc6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cc13fe31cbb2cd25151cb63024085d6d5ad6c4f48a0e566544950502441defc6", kill_on_drop: false }` [INFO] [stdout] cc13fe31cbb2cd25151cb63024085d6d5ad6c4f48a0e566544950502441defc6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 2d03cf77a08cf9da3f78255c3f527be6dd87469ed3494355fe70bc0b4aa697a7 [INFO] running `Command { std: "docker" "start" "-a" "2d03cf77a08cf9da3f78255c3f527be6dd87469ed3494355fe70bc0b4aa697a7", kill_on_drop: false }` [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: `rnafamprob` (lib) generated 5 warnings (2 duplicates) [INFO] [stderr] warning: `rnafamprob` (lib test) generated 5 warnings (5 duplicates) [INFO] [stderr] warning: panic message is not a string literal [INFO] [stderr] --> src/main.rs:49:72 [INFO] [stderr] | [INFO] [stderr] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stderr] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: add a "{}" format string to Display the message [INFO] [stderr] | [INFO] [stderr] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stderr] | +++++ [INFO] [stderr] [INFO] [stderr] warning: `rnafamprob` (bin "rnafamprob") generated 1 warning [INFO] [stderr] warning: `rnafamprob` (bin "rnafamprob" test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.20s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rnafamprob-42dac67d4899d12e) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rnafamprob-63bb38b4766597f2) [INFO] [stdout] running 0 tests [INFO] [stderr] Running tests/tests.rs (/opt/rustwide/target/debug/deps/tests-b286467074aa0167) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_rnafam_program ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_rnafam_program stdout ---- [INFO] [stdout] thread 'test_rnafam_program' panicked at 'Failed to run the RNAfamProb program.: Os { code: 2, kind: NotFound, message: "No such file or directory" }', tests/tests.rs:19:45 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5582e76600ac - std::backtrace_rs::backtrace::libunwind::trace::h91c465e73bf6c785 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stdout] 1: 0x5582e76600ac - std::backtrace_rs::backtrace::trace_unsynchronized::hae9da36f5d58b5f3 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x5582e76600ac - std::sys_common::backtrace::_print_fmt::h7f499fa126a7effb [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x5582e76600ac - ::fmt::h3e2b509ce2ce6007 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x5582e7685a7c - core::fmt::write::h753c7571fa063ecb [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/fmt/mod.rs:1168:17 [INFO] [stdout] 5: 0x5582e765b313 - std::io::Write::write_fmt::hb649ab67f71b6655 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/io/mod.rs:1660:15 [INFO] [stdout] 6: 0x5582e7662782 - std::sys_common::backtrace::_print::h64941a6fc8b0ed9b [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x5582e7662782 - std::sys_common::backtrace::print::hcf25e43e1a9b0766 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x5582e7662782 - std::panicking::default_hook::{{closure}}::h78d3e6cf97fc623d [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:211:50 [INFO] [stdout] 9: 0x5582e76623d1 - std::panicking::default_hook::hda898f8d3ad1a5ae [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:225:9 [INFO] [stdout] 10: 0x5582e7662dd3 - std::panicking::rust_panic_with_hook::h1a5ea2d6c23051aa [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:606:17 [INFO] [stdout] 11: 0x5582e7662af0 - std::panicking::begin_panic_handler::{{closure}}::h07f549390938b73f [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:502:13 [INFO] [stdout] 12: 0x5582e7660554 - std::sys_common::backtrace::__rust_end_short_backtrace::h5ec3758a92cfb00d [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stdout] 13: 0x5582e7662829 - rust_begin_unwind [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:498:5 [INFO] [stdout] 14: 0x5582e7603dc1 - core::panicking::panic_fmt::h3a79a6a99affe1d5 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panicking.rs:116:14 [INFO] [stdout] 15: 0x5582e7603eb3 - core::result::unwrap_failed::ha0327e3803285d6e [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/result.rs:1690:5 [INFO] [stdout] 16: 0x5582e7608ddc - core::result::Result::expect::h582eed618c0c0438 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/result.rs:975:23 [INFO] [stdout] 17: 0x5582e7605c02 - tests::run_command::hac835d633e018620 [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:19:3 [INFO] [stdout] 18: 0x5582e7605d0d - tests::test_rnafam_program::h672a3877674f1271 [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:12:3 [INFO] [stdout] 19: 0x5582e7605c3a - tests::test_rnafam_program::{{closure}}::h55dd8b0c02aa411f [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:8:1 [INFO] [stdout] 20: 0x5582e7607a1e - core::ops::function::FnOnce::call_once::h365a008abcc2fd6a [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x5582e7634ee3 - core::ops::function::FnOnce::call_once::h1845a80638abc06e [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x5582e7634ee3 - test::__rust_begin_short_backtrace::h4f56ccea01b9889f [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/test/src/lib.rs:574:5 [INFO] [stdout] 23: 0x5582e7633bcf - as core::ops::function::FnOnce>::call_once::h5afedf14a39ffa74 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/alloc/src/boxed.rs:1854:9 [INFO] [stdout] 24: 0x5582e7633bcf - as core::ops::function::FnOnce<()>>::call_once::hd5aaa1b551e9ce71 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 25: 0x5582e7633bcf - std::panicking::try::do_call::h316eebee63f96d32 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:406:40 [INFO] [stdout] 26: 0x5582e7633bcf - std::panicking::try::h662e31e84dd7ce52 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:370:19 [INFO] [stdout] 27: 0x5582e7633bcf - std::panic::catch_unwind::h129c1b23f076663f [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panic.rs:133:14 [INFO] [stdout] 28: 0x5582e7633bcf - test::run_test_in_process::h51d800d572f878ef [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/test/src/lib.rs:597:18 [INFO] [stdout] 29: 0x5582e7633bcf - test::run_test::run_test_inner::{{closure}}::h71a47db430260854 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/test/src/lib.rs:491:39 [INFO] [stdout] 30: 0x5582e763cf91 - test::run_test::run_test_inner::{{closure}}::h02edd5b3e2dab52a [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/test/src/lib.rs:518:37 [INFO] [stdout] 31: 0x5582e763cf91 - std::sys_common::backtrace::__rust_begin_short_backtrace::h0838cfc8b0e995ec [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stdout] 32: 0x5582e7609a1f - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h4c2725d7078043cd [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/thread/mod.rs:477:17 [INFO] [stdout] 33: 0x5582e7609a1f - as core::ops::function::FnOnce<()>>::call_once::hdf1aa612eed87270 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 34: 0x5582e7609a1f - std::panicking::try::do_call::hc72f8de3706d18d6 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:406:40 [INFO] [stdout] 35: 0x5582e7609a1f - std::panicking::try::h63f01f54dbd0fb87 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:370:19 [INFO] [stdout] 36: 0x5582e7609a1f - std::panic::catch_unwind::h58bc464ae9b26453 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panic.rs:133:14 [INFO] [stdout] 37: 0x5582e7609a1f - std::thread::Builder::spawn_unchecked::{{closure}}::h6c065e19513e33e3 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/thread/mod.rs:476:30 [INFO] [stdout] 38: 0x5582e7609a1f - core::ops::function::FnOnce::call_once{{vtable.shim}}::hd143450c74f35c32 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x5582e7668a33 - as core::ops::function::FnOnce>::call_once::h49b6c7c5155a2296 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/alloc/src/boxed.rs:1854:9 [INFO] [stdout] 40: 0x5582e7668a33 - as core::ops::function::FnOnce>::call_once::ha8b5234bfeb15105 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/alloc/src/boxed.rs:1854:9 [INFO] [stdout] 41: 0x5582e7668a33 - std::sys::unix::thread::Thread::new::thread_start::h6f207dd842d64859 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys/unix/thread.rs:108:17 [INFO] [stdout] 42: 0x7f10ca5b8609 - start_thread [INFO] [stdout] 43: 0x7f10ca38a293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_rnafam_program [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--test tests' [INFO] running `Command { std: "docker" "inspect" "2d03cf77a08cf9da3f78255c3f527be6dd87469ed3494355fe70bc0b4aa697a7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2d03cf77a08cf9da3f78255c3f527be6dd87469ed3494355fe70bc0b4aa697a7", kill_on_drop: false }` [INFO] [stdout] 2d03cf77a08cf9da3f78255c3f527be6dd87469ed3494355fe70bc0b4aa697a7