[INFO] fetching crate psdm 0.1.0...
[INFO] testing psdm-0.1.0 against 1.59.0 for beta-1.60-1
[INFO] extracting crate psdm 0.1.0 into /workspace/builds/worker-9/source
[INFO] validating manifest of crates.io crate psdm 0.1.0 on toolchain 1.59.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate psdm 0.1.0
[INFO] finished tweaking crates.io crate psdm 0.1.0
[INFO] tweaked toml for crates.io crate psdm 0.1.0 written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] crate crates.io crate psdm 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8b2af856c1ce426d1e46976f41d6d7c2f698d7f48c43806b794c76c7a236fa91
[INFO] running `Command { std: "docker" "start" "-a" "8b2af856c1ce426d1e46976f41d6d7c2f698d7f48c43806b794c76c7a236fa91", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8b2af856c1ce426d1e46976f41d6d7c2f698d7f48c43806b794c76c7a236fa91", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8b2af856c1ce426d1e46976f41d6d7c2f698d7f48c43806b794c76c7a236fa91", kill_on_drop: false }`
[INFO] [stdout] 8b2af856c1ce426d1e46976f41d6d7c2f698d7f48c43806b794c76c7a236fa91
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fb3306fb9528365bb55c285cbcd3b291cfbd5550ad84af5f93b04a48166f2b49
[INFO] running `Command { std: "docker" "start" "-a" "fb3306fb9528365bb55c285cbcd3b291cfbd5550ad84af5f93b04a48166f2b49", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.105
[INFO] [stderr]    Compiling cc v1.0.71
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling anyhow v1.0.44
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling itertools v0.10.1
[INFO] [stderr]    Compiling crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling matrixmultiply v0.3.1
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling terminal_size v0.1.17
[INFO] [stderr]    Compiling console v0.15.0
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling env_logger v0.9.0
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling num-complex v0.4.0
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling noodles-bgzf v0.4.0
[INFO] [stderr]    Compiling noodles-sam v0.6.0
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling ndarray v0.15.3
[INFO] [stderr]    Compiling bgzip v0.2.1
[INFO] [stderr]    Compiling bzip2 v0.4.3
[INFO] [stderr]    Compiling niffler v2.3.2
[INFO] [stderr]    Compiling noodles-core v0.2.3
[INFO] [stderr]    Compiling noodles-fasta v0.3.1
[INFO] [stderr]    Compiling structopt v0.3.25
[INFO] [stderr]    Compiling indicatif v0.16.2
[INFO] [stderr]    Compiling psdm v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 8.41s
[INFO] running `Command { std: "docker" "inspect" "fb3306fb9528365bb55c285cbcd3b291cfbd5550ad84af5f93b04a48166f2b49", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fb3306fb9528365bb55c285cbcd3b291cfbd5550ad84af5f93b04a48166f2b49", kill_on_drop: false }`
[INFO] [stdout] fb3306fb9528365bb55c285cbcd3b291cfbd5550ad84af5f93b04a48166f2b49
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7eef40c945fe151f4c76c3476c1766514f86994974c708acb63eb1a514a5780a
[INFO] running `Command { std: "docker" "start" "-a" "7eef40c945fe151f4c76c3476c1766514f86994974c708acb63eb1a514a5780a", kill_on_drop: false }`
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling predicates-core v1.0.2
[INFO] [stderr]    Compiling termtree v0.2.3
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling predicates-tree v1.0.4
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling predicates v2.0.3
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling assert_cmd v2.0.2
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling psdm v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 3.26s
[INFO] running `Command { std: "docker" "inspect" "7eef40c945fe151f4c76c3476c1766514f86994974c708acb63eb1a514a5780a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7eef40c945fe151f4c76c3476c1766514f86994974c708acb63eb1a514a5780a", kill_on_drop: false }`
[INFO] [stdout] 7eef40c945fe151f4c76c3476c1766514f86994974c708acb63eb1a514a5780a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 36043dfe419e848acfe212ef4b0b7cd82b6ce0336af5963fe4692d78ac792185
[INFO] running `Command { std: "docker" "start" "-a" "36043dfe419e848acfe212ef4b0b7cd82b6ce0336af5963fe4692d78ac792185", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.05s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/psdm-e978ac4bd2260f50)
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test tests::alignments_all_have_same_length ... ok
[INFO] [stdout] test tests::alignments_do_not_have_same_length_as_starting_seqlen ... ok
[INFO] [stdout] test tests::alignments_sorted_by_id ... ok
[INFO] [stdout] test tests::argsort ... ok
[INFO] [stdout] test tests::alignments_do_not_all_have_same_length ... ok
[INFO] [stdout] test tests::argsort_on_empty ... ok
[INFO] [stdout] test tests::argsort_with_str ... ok
[INFO] [stdout] test tests::parse_chars ... ok
[INFO] [stdout] test tests::sort_by_index ... ok
[INFO] [stdout] test tests::test_hamming_distance ... ok
[INFO] [stdout] test tests::transform_ignore_case ... ok
[INFO] [stdout] test tests::transform_ignore_chars_case_insensitive ... ok
[INFO] [stdout] test tests::transform_ignore_chars ... ok
[INFO] [stdout] test tests::transform_ignore_chars_case_sensitive ... ok
[INFO] [stdout] test tests::transform_preserve_case ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/psdm-2d0688c71dfb21db)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test tests::check_path_exists_it_doesnt ... ok
[INFO] [stdout] test tests::check_path_it_does ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/main.rs (/opt/rustwide/target/debug/deps/main-6aaa8506757137bb)
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test inter_alignment_in_long_form_sorted ... ok
[INFO] [stdout] test alignment_seqs_do_not_have_same_length ... ok
[INFO] [stdout] test input_file_does_not_exist ... ok
[INFO] [stdout] test intra_alignment_with_defaults_long_form_sorted ... ok
[INFO] [stdout] test intra_alignment_with_ignore_case_ignore_characters ... ok
[INFO] [stdout] test alignment_is_not_fasta ... ok
[INFO] [stdout] test inter_alignment_with_tab_delim ... ok
[INFO] [stdout] test alignment_files_do_not_have_same_length ... ok
[INFO] [stdout] test intra_alignment_with_defaults ... ok
[INFO] [stdout] test intra_alignment_with_ignore_case_ignore_characters_sorted ... ok
[INFO] [stdout] test more_than_two_input_files_fails ... ok
[INFO] [stdout] test intra_alignment_with_defaults_long_form ... ok
[INFO] [stdout] test intra_alignment_with_ignore_case_ignore_no_characters ... ok
[INFO] [stdout] test trying_to_create_output_in_nonexistent_dir ... ok
[INFO] [stdout] test intra_alignment_with_use_case_ignore_characters ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests psdm
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "36043dfe419e848acfe212ef4b0b7cd82b6ce0336af5963fe4692d78ac792185", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "36043dfe419e848acfe212ef4b0b7cd82b6ce0336af5963fe4692d78ac792185", kill_on_drop: false }`
[INFO] [stdout] 36043dfe419e848acfe212ef4b0b7cd82b6ce0336af5963fe4692d78ac792185