[INFO] fetching crate mfqe 0.5.0... [INFO] testing mfqe-0.5.0 against 1.59.0 for beta-1.60-1 [INFO] extracting crate mfqe 0.5.0 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate mfqe 0.5.0 on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate mfqe 0.5.0 [INFO] finished tweaking crates.io crate mfqe 0.5.0 [INFO] tweaked toml for crates.io crate mfqe 0.5.0 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate crates.io crate mfqe 0.5.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 39875ef749d071b32b2b1457258e2d85517e8be4fdc1d21d5f632e945d985a4d [INFO] running `Command { std: "docker" "start" "-a" "39875ef749d071b32b2b1457258e2d85517e8be4fdc1d21d5f632e945d985a4d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "39875ef749d071b32b2b1457258e2d85517e8be4fdc1d21d5f632e945d985a4d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "39875ef749d071b32b2b1457258e2d85517e8be4fdc1d21d5f632e945d985a4d", kill_on_drop: false }` [INFO] [stdout] 39875ef749d071b32b2b1457258e2d85517e8be4fdc1d21d5f632e945d985a4d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b3452ee99b7bc075e3b48c4e208c7eac006468654bfa8f89af94908dc8db09e9 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b3452ee99b7bc075e3b48c4e208c7eac006468654bfa8f89af94908dc8db09e9", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling memoffset v0.2.1 [INFO] [stderr] Compiling smallvec v0.6.12 [INFO] [stderr] Compiling crossbeam-utils v0.5.0 [INFO] [stderr] Compiling syn v1.0.7 [INFO] [stderr] Compiling serde v1.0.102 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Compiling safemem v0.2.0 [INFO] [stderr] Compiling termcolor v1.0.5 [INFO] [stderr] Compiling owning_ref v0.4.0 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling miniz_oxide v0.3.5 [INFO] [stderr] Compiling crossbeam-epoch v0.5.2 [INFO] [stderr] Compiling lock_api v0.1.5 [INFO] [stderr] Compiling crossbeam-epoch v0.6.1 [INFO] [stderr] Compiling crossbeam-deque v0.5.2 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling slice-deque v0.1.16 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Compiling flate2 v1.0.12 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling buf_redux v0.7.1 [INFO] [stderr] Compiling parking_lot_core v0.3.1 [INFO] [stderr] Compiling parking_lot v0.6.4 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling crossbeam-channel v0.2.6 [INFO] [stderr] Compiling crossbeam v0.4.1 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling serde_derive v1.0.102 [INFO] [stderr] Compiling seq_io v0.3.0 [INFO] [stderr] Compiling mfqe v0.5.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:32:18 [INFO] [stdout] | [INFO] [stdout] 32 | \n\ [INFO] [stdout] | __________________^ [INFO] [stdout] 33 | | [INFO] [stdout] 34 | | Extract one or more sets of reads from a FASTQ (or \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:35:63 [INFO] [stdout] | [INFO] [stdout] 35 | FASTA) file by specifying their read names.\n\n\ [INFO] [stdout] | _______________________________________________________________^ [INFO] [stdout] 36 | | [INFO] [stdout] 37 | | Read name files are uncompressed text files with read names \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:38:37 [INFO] [stdout] | [INFO] [stdout] 38 | (without comments).\n\ [INFO] [stdout] | _____________________________________^ [INFO] [stdout] 39 | | [INFO] [stdout] 40 | | Output is gzip-compressed unless --output-uncompressed is specified, input is uncompressed.\n\ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 56.85s [INFO] running `Command { std: "docker" "inspect" "b3452ee99b7bc075e3b48c4e208c7eac006468654bfa8f89af94908dc8db09e9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b3452ee99b7bc075e3b48c4e208c7eac006468654bfa8f89af94908dc8db09e9", kill_on_drop: false }` [INFO] [stdout] b3452ee99b7bc075e3b48c4e208c7eac006468654bfa8f89af94908dc8db09e9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f19831393a7cd6f743968e141c5a310e4552d72496ce38cc08aca60b5d9aaa7d [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f19831393a7cd6f743968e141c5a310e4552d72496ce38cc08aca60b5d9aaa7d", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.46 [INFO] [stderr] Compiling getrandom v0.1.13 [INFO] [stderr] Compiling winapi v0.3.8 [INFO] [stderr] Compiling rgb v0.8.14 [INFO] [stderr] Compiling environment v0.1.1 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling serde_json v1.0.41 [INFO] [stderr] Compiling synstructure v0.12.1 [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:32:18 [INFO] [stdout] | [INFO] [stdout] 32 | \n\ [INFO] [stdout] | __________________^ [INFO] [stdout] 33 | | [INFO] [stdout] 34 | | Extract one or more sets of reads from a FASTQ (or \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:35:63 [INFO] [stdout] | [INFO] [stdout] 35 | FASTA) file by specifying their read names.\n\n\ [INFO] [stdout] | _______________________________________________________________^ [INFO] [stdout] 36 | | [INFO] [stdout] 37 | | Read name files are uncompressed text files with read names \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:38:37 [INFO] [stdout] | [INFO] [stdout] 38 | (without comments).\n\ [INFO] [stdout] | _____________________________________^ [INFO] [stdout] 39 | | [INFO] [stdout] 40 | | Output is gzip-compressed unless --output-uncompressed is specified, input is uncompressed.\n\ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling backtrace-sys v0.1.32 [INFO] [stderr] Compiling rand_chacha v0.2.1 [INFO] [stderr] Compiling failure_derive v0.1.6 [INFO] [stderr] Compiling rand v0.7.2 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling cgmath v0.16.1 [INFO] [stderr] Compiling backtrace v0.3.40 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling failure v0.1.6 [INFO] [stderr] Compiling winconsole v0.10.0 [INFO] [stderr] Compiling colored v1.8.0 [INFO] [stderr] Compiling assert_cli v0.6.3 [INFO] [stderr] Compiling mfqe v0.5.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:32:18 [INFO] [stdout] | [INFO] [stdout] 32 | \n\ [INFO] [stdout] | __________________^ [INFO] [stdout] 33 | | [INFO] [stdout] 34 | | Extract one or more sets of reads from a FASTQ (or \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:35:63 [INFO] [stdout] | [INFO] [stdout] 35 | FASTA) file by specifying their read names.\n\n\ [INFO] [stdout] | _______________________________________________________________^ [INFO] [stdout] 36 | | [INFO] [stdout] 37 | | Read name files are uncompressed text files with read names \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:38:37 [INFO] [stdout] | [INFO] [stdout] 38 | (without comments).\n\ [INFO] [stdout] | _____________________________________^ [INFO] [stdout] 39 | | [INFO] [stdout] 40 | | Output is gzip-compressed unless --output-uncompressed is specified, input is uncompressed.\n\ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 29.77s [INFO] running `Command { std: "docker" "inspect" "f19831393a7cd6f743968e141c5a310e4552d72496ce38cc08aca60b5d9aaa7d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f19831393a7cd6f743968e141c5a310e4552d72496ce38cc08aca60b5d9aaa7d", kill_on_drop: false }` [INFO] [stdout] f19831393a7cd6f743968e141c5a310e4552d72496ce38cc08aca60b5d9aaa7d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] acf280aff3c9ec388fd6ce002a1f2bae763aea7cba1ff6ccf4590ee38e6f447a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "acf280aff3c9ec388fd6ce002a1f2bae763aea7cba1ff6ccf4590ee38e6f447a", kill_on_drop: false }` [INFO] [stderr] warning: multiple lines skipped by escaped newline [INFO] [stderr] --> src/main.rs:32:18 [INFO] [stderr] | [INFO] [stderr] 32 | \n\ [INFO] [stderr] | __________________^ [INFO] [stderr] 33 | | [INFO] [stderr] 34 | | Extract one or more sets of reads from a FASTQ (or \ [INFO] [stderr] | |_______________^ skipping everything up to and including this point [INFO] [stderr] [INFO] [stderr] warning: multiple lines skipped by escaped newline [INFO] [stderr] --> src/main.rs:35:63 [INFO] [stderr] | [INFO] [stderr] 35 | FASTA) file by specifying their read names.\n\n\ [INFO] [stderr] | _______________________________________________________________^ [INFO] [stderr] 36 | | [INFO] [stderr] 37 | | Read name files are uncompressed text files with read names \ [INFO] [stderr] | |_______________^ skipping everything up to and including this point [INFO] [stderr] [INFO] [stderr] warning: multiple lines skipped by escaped newline [INFO] [stderr] --> src/main.rs:38:37 [INFO] [stderr] | [INFO] [stderr] 38 | (without comments).\n\ [INFO] [stderr] | _____________________________________^ [INFO] [stderr] 39 | | [INFO] [stderr] 40 | | Output is gzip-compressed unless --output-uncompressed is specified, input is uncompressed.\n\ [INFO] [stderr] | |_______________^ skipping everything up to and including this point [INFO] [stderr] [INFO] [stderr] warning: `mfqe` (bin "mfqe" test) generated 3 warnings [INFO] [stderr] warning: `mfqe` (bin "mfqe") generated 3 warnings (3 duplicates) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/mfqe-92a0f2d94534d8bc) [INFO] [stderr] Running tests/test_cmdline.rs (/opt/rustwide/target/debug/deps/test_cmdline-0bdc11667bc3eba8) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test tests::test_fasta_by_file ... ok [INFO] [stdout] test tests::test_fastq_by_stdin ... ok [INFO] [stdout] test tests::test_fasta_by_stdin ... ok [INFO] [stdout] test tests::test_fastq_by_file ... ok [INFO] [stdout] test tests::test_define_sequence_names ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.65s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "acf280aff3c9ec388fd6ce002a1f2bae763aea7cba1ff6ccf4590ee38e6f447a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "acf280aff3c9ec388fd6ce002a1f2bae763aea7cba1ff6ccf4590ee38e6f447a", kill_on_drop: false }` [INFO] [stdout] acf280aff3c9ec388fd6ce002a1f2bae763aea7cba1ff6ccf4590ee38e6f447a