[INFO] fetching crate mermer-rs 0.1.0... [INFO] testing mermer-rs-0.1.0 against 1.59.0 for beta-1.60-1 [INFO] extracting crate mermer-rs 0.1.0 into /workspace/builds/worker-7/source [INFO] validating manifest of crates.io crate mermer-rs 0.1.0 on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate mermer-rs 0.1.0 [INFO] finished tweaking crates.io crate mermer-rs 0.1.0 [INFO] tweaked toml for crates.io crate mermer-rs 0.1.0 written to /workspace/builds/worker-7/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 0172bdb7e697857a71e313e70e7edaad89481d63245a25b2d6bb33d4b99f643f [INFO] running `Command { std: "docker" "start" "-a" "0172bdb7e697857a71e313e70e7edaad89481d63245a25b2d6bb33d4b99f643f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0172bdb7e697857a71e313e70e7edaad89481d63245a25b2d6bb33d4b99f643f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0172bdb7e697857a71e313e70e7edaad89481d63245a25b2d6bb33d4b99f643f", kill_on_drop: false }` [INFO] [stdout] 0172bdb7e697857a71e313e70e7edaad89481d63245a25b2d6bb33d4b99f643f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7fcd5447740a740c20bf73ad86053ae617ccf4f05eb43c637def963c60b0f2c6 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "7fcd5447740a740c20bf73ad86053ae617ccf4f05eb43c637def963c60b0f2c6", kill_on_drop: false }` [INFO] [stderr] Compiling mermer-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/lib.rs:45:27 [INFO] [stdout] | [INFO] [stdout] 45 | const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 45 - const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stdout] 45 + const TABLE_SIZE: usize = 1 << (2 * SCAN_WIDTH); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `name` [INFO] [stdout] --> src/lib.rs:50:5 [INFO] [stdout] | [INFO] [stdout] 50 | name: String, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `position` [INFO] [stdout] --> src/lib.rs:51:5 [INFO] [stdout] | [INFO] [stdout] 51 | position: u64, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `size` [INFO] [stdout] --> src/lib.rs:52:5 [INFO] [stdout] | [INFO] [stdout] 52 | size: u64, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `make_reverse_complement` [INFO] [stdout] --> src/lib.rs:240:4 [INFO] [stdout] | [INFO] [stdout] 240 | fn make_reverse_complement(motif: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.19s [INFO] running `Command { std: "docker" "inspect" "7fcd5447740a740c20bf73ad86053ae617ccf4f05eb43c637def963c60b0f2c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7fcd5447740a740c20bf73ad86053ae617ccf4f05eb43c637def963c60b0f2c6", kill_on_drop: false }` [INFO] [stdout] 7fcd5447740a740c20bf73ad86053ae617ccf4f05eb43c637def963c60b0f2c6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2be618bace0971dcf8709c7f2107950a4e330fa58439db4ea22ba2460966b157 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2be618bace0971dcf8709c7f2107950a4e330fa58439db4ea22ba2460966b157", kill_on_drop: false }` [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/lib.rs:45:27 [INFO] [stdout] | [INFO] [stdout] 45 | const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 45 - const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stdout] 45 + const TABLE_SIZE: usize = 1 << (2 * SCAN_WIDTH); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `name` [INFO] [stdout] --> src/lib.rs:50:5 [INFO] [stdout] | [INFO] [stdout] 50 | name: String, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `position` [INFO] [stdout] --> src/lib.rs:51:5 [INFO] [stdout] | [INFO] [stdout] 51 | position: u64, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `size` [INFO] [stdout] --> src/lib.rs:52:5 [INFO] [stdout] | [INFO] [stdout] 52 | size: u64, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `make_reverse_complement` [INFO] [stdout] --> src/lib.rs:240:4 [INFO] [stdout] | [INFO] [stdout] 240 | fn make_reverse_complement(motif: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling mermer-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/lib.rs:45:27 [INFO] [stdout] | [INFO] [stdout] 45 | const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 45 - const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stdout] 45 + const TABLE_SIZE: usize = 1 << (2 * SCAN_WIDTH); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `name` [INFO] [stdout] --> src/lib.rs:50:5 [INFO] [stdout] | [INFO] [stdout] 50 | name: String, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `position` [INFO] [stdout] --> src/lib.rs:51:5 [INFO] [stdout] | [INFO] [stdout] 51 | position: u64, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `size` [INFO] [stdout] --> src/lib.rs:52:5 [INFO] [stdout] | [INFO] [stdout] 52 | size: u64, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `make_reverse_complement` [INFO] [stdout] --> src/lib.rs:240:4 [INFO] [stdout] | [INFO] [stdout] 240 | fn make_reverse_complement(motif: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.63s [INFO] running `Command { std: "docker" "inspect" "2be618bace0971dcf8709c7f2107950a4e330fa58439db4ea22ba2460966b157", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2be618bace0971dcf8709c7f2107950a4e330fa58439db4ea22ba2460966b157", kill_on_drop: false }` [INFO] [stdout] 2be618bace0971dcf8709c7f2107950a4e330fa58439db4ea22ba2460966b157 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 63ca9668bf64f1d30e64539736961c655bd3ef8969617d30b9ed3f58fdd60d66 [INFO] running `Command { std: "docker" "start" "-a" "63ca9668bf64f1d30e64539736961c655bd3ef8969617d30b9ed3f58fdd60d66", kill_on_drop: false }` [INFO] [stdout] [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stdout] running 1 test [INFO] [stderr] --> src/lib.rs:45:27 [INFO] [stderr] | [INFO] [stderr] 45 | const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_parens)]` on by default [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 45 - const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stderr] 45 + const TABLE_SIZE: usize = 1 << (2 * SCAN_WIDTH); [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: field is never read: `name` [INFO] [stderr] --> src/lib.rs:50:5 [INFO] [stderr] | [INFO] [stderr] 50 | name: String, [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: field is never read: `position` [INFO] [stderr] --> src/lib.rs:51:5 [INFO] [stderr] | [INFO] [stderr] 51 | position: u64, [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: field is never read: `size` [INFO] [stderr] --> src/lib.rs:52:5 [INFO] [stderr] | [INFO] [stderr] 52 | size: u64, [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `make_reverse_complement` [INFO] [stderr] --> src/lib.rs:240:4 [INFO] [stderr] | [INFO] [stderr] 240 | fn make_reverse_complement(motif: &str) -> String { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `mermer-rs` (lib) generated 5 warnings [INFO] [stderr] warning: `mermer-rs` (lib test) generated 5 warnings (5 duplicates) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.01s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/mermer_rs-0d049bfd85a1d47b) [INFO] [stdout] test tests::test_substitute_char ... ok [INFO] [stderr] Doc-tests mermer-rs [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> /opt/rustwide/workdir/src/lib.rs:45:27 [INFO] [stderr] | [INFO] [stderr] 45 | const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_parens)]` on by default [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 45 - const TABLE_SIZE: usize = (1 << (2 * SCAN_WIDTH)); [INFO] [stderr] 45 + const TABLE_SIZE: usize = 1 << (2 * SCAN_WIDTH); [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: 1 warning emitted [INFO] [stderr] [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test src/lib.rs - read_fasta (line 159) ... FAILED [INFO] [stdout] test src/lib.rs - substitute_char (line 276) ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/lib.rs - read_fasta (line 159) stdout ---- [INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `File` [INFO] [stdout] --> src/lib.rs:160:9 [INFO] [stdout] | [INFO] [stdout] 3 | let f = File::open("dm6.fa").unwrap(); [INFO] [stdout] | ^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing this struct [INFO] [stdout] | [INFO] [stdout] 2 | use std::fs::File; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find function `read_fasta` in this scope [INFO] [stdout] --> src/lib.rs:161:27 [INFO] [stdout] | [INFO] [stdout] 4 | let (_, _, chromosomes) = read_fasta(&f).unwrap(); [INFO] [stdout] | ^^^^^^^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing this function [INFO] [stdout] | [INFO] [stdout] 2 | use mermer_rs::read_fasta; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0425, E0433. [INFO] [stdout] For more information about an error, try `rustc --explain E0425`. [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/lib.rs - substitute_char (line 276) stdout ---- [INFO] [stdout] error[E0425]: cannot find function `substitute_char` in this scope [INFO] [stdout] --> src/lib.rs:277:20 [INFO] [stdout] | [INFO] [stdout] 3 | assert_eq!("CAAA", substitute_char("AAAA", 0, 'C')); [INFO] [stdout] | ^^^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find function `substitute_char` in this scope [INFO] [stdout] --> src/lib.rs:278:20 [INFO] [stdout] | [INFO] [stdout] 4 | assert_eq!("AACA", substitute_char("AAAA", 2, 'C')); [INFO] [stdout] | ^^^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0425`. [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/lib.rs - read_fasta (line 159) [INFO] [stdout] src/lib.rs - substitute_char (line 276) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.18s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--doc' [INFO] running `Command { std: "docker" "inspect" "63ca9668bf64f1d30e64539736961c655bd3ef8969617d30b9ed3f58fdd60d66", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "63ca9668bf64f1d30e64539736961c655bd3ef8969617d30b9ed3f58fdd60d66", kill_on_drop: false }` [INFO] [stdout] 63ca9668bf64f1d30e64539736961c655bd3ef8969617d30b9ed3f58fdd60d66