[INFO] fetching crate kseq 0.2.7... [INFO] testing kseq-0.2.7 against 1.59.0 for beta-1.60-1 [INFO] extracting crate kseq 0.2.7 into /workspace/builds/worker-82/source [INFO] validating manifest of crates.io crate kseq 0.2.7 on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate kseq 0.2.7 [INFO] finished tweaking crates.io crate kseq 0.2.7 [INFO] tweaked toml for crates.io crate kseq 0.2.7 written to /workspace/builds/worker-82/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1565915c28b1ae6a40a215af097a293077c28205ffc79b7e7a6001085775404a [INFO] running `Command { std: "docker" "start" "-a" "1565915c28b1ae6a40a215af097a293077c28205ffc79b7e7a6001085775404a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1565915c28b1ae6a40a215af097a293077c28205ffc79b7e7a6001085775404a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1565915c28b1ae6a40a215af097a293077c28205ffc79b7e7a6001085775404a", kill_on_drop: false }` [INFO] [stdout] 1565915c28b1ae6a40a215af097a293077c28205ffc79b7e7a6001085775404a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 12d01a27fd3841f2d679f69cf57428e669e935de67a79bdf12ae52322bcf6679 [INFO] running `Command { std: "docker" "start" "-a" "12d01a27fd3841f2d679f69cf57428e669e935de67a79bdf12ae52322bcf6679", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.73 [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling kseq v0.2.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3.52s [INFO] running `Command { std: "docker" "inspect" "12d01a27fd3841f2d679f69cf57428e669e935de67a79bdf12ae52322bcf6679", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "12d01a27fd3841f2d679f69cf57428e669e935de67a79bdf12ae52322bcf6679", kill_on_drop: false }` [INFO] [stdout] 12d01a27fd3841f2d679f69cf57428e669e935de67a79bdf12ae52322bcf6679 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5201887724ff80b021f1a616f46b4079a0184b55bd9d2a8f0a726fcf2411d747 [INFO] running `Command { std: "docker" "start" "-a" "5201887724ff80b021f1a616f46b4079a0184b55bd9d2a8f0a726fcf2411d747", kill_on_drop: false }` [INFO] [stderr] Compiling crossbeam-utils v0.8.7 [INFO] [stderr] Compiling serde v1.0.136 [INFO] [stderr] Compiling semver v1.0.6 [INFO] [stderr] Compiling crossbeam-epoch v0.9.7 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling serde_json v1.0.79 [INFO] [stderr] Compiling syn v1.0.86 [INFO] [stderr] Compiling plotters-backend v0.3.2 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling half v1.8.2 [INFO] [stderr] Compiling safemem v0.3.3 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling oorandom v11.1.3 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling memoffset v0.6.5 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling walkdir v2.3.2 [INFO] [stderr] Compiling itertools v0.10.3 [INFO] [stderr] Compiling plotters-svg v0.3.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.2 [INFO] [stderr] Compiling rustc_version v0.4.0 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling cast v0.2.7 [INFO] [stderr] Compiling plotters v0.3.1 [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling criterion-plot v0.4.4 [INFO] [stderr] Compiling needletail v0.4.1 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling serde_cbor v0.11.2 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling serde_derive v1.0.136 [INFO] [stderr] Compiling criterion v0.3.5 [INFO] [stderr] Compiling kseq v0.2.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 23.49s [INFO] running `Command { std: "docker" "inspect" "5201887724ff80b021f1a616f46b4079a0184b55bd9d2a8f0a726fcf2411d747", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5201887724ff80b021f1a616f46b4079a0184b55bd9d2a8f0a726fcf2411d747", kill_on_drop: false }` [INFO] [stdout] 5201887724ff80b021f1a616f46b4079a0184b55bd9d2a8f0a726fcf2411d747 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 7a1e9c4035449d9e862c02d1cfd318fc8ac5d8c2e458b5a3880f4327f3a55108 [INFO] running `Command { std: "docker" "start" "-a" "7a1e9c4035449d9e862c02d1cfd318fc8ac5d8c2e458b5a3880f4327f3a55108", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 7.81s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/kseq-fea675e3ddb9c731) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/test.rs (/opt/rustwide/target/debug/deps/test-85c2a4deafc83ace) [INFO] [stdout] [INFO] [stdout] running 13 tests [INFO] [stdout] test test_invalid_fastq_seq_has_diff_len_with_qual ... ok [INFO] [stdout] test test_normal_multi_line_fastq ... ok [INFO] [stdout] test test_truncate_fastq_miss_qual ... ok [INFO] [stdout] test test_truncate_fastq_miss_sep ... ok [INFO] [stdout] test test_truncate_fastq_miss_seq ... ok [INFO] [stdout] test test_normal_multi_line_fasta ... ok [INFO] [stdout] test test_invalid_fasta_with_seq_len_is_0 ... ok [INFO] [stdout] test test_truncate_fasta ... ok [INFO] [stdout] test test_invalid_fastq_miss_sep ... ok [INFO] [stdout] test test_invalid_fastq_with_seq_len_is_0 ... ok [INFO] [stdout] test test_normal_one_line_fasta ... ok [INFO] [stdout] test test_invalid_fasta ... ok [INFO] [stdout] test test_normal_one_line_fastq ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 13 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests kseq [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test src/lib.rs - (line 43) ... ignored [INFO] [stdout] test src/lib.rs - (line 27) - compile ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 22.85s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "7a1e9c4035449d9e862c02d1cfd318fc8ac5d8c2e458b5a3880f4327f3a55108", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7a1e9c4035449d9e862c02d1cfd318fc8ac5d8c2e458b5a3880f4327f3a55108", kill_on_drop: false }` [INFO] [stdout] 7a1e9c4035449d9e862c02d1cfd318fc8ac5d8c2e458b5a3880f4327f3a55108