[INFO] fetching crate intspan 0.6.1... [INFO] testing intspan-0.6.1 against 1.59.0 for beta-1.60-1 [INFO] extracting crate intspan 0.6.1 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate intspan 0.6.1 on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate intspan 0.6.1 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate intspan 0.6.1 [INFO] tweaked toml for crates.io crate intspan 0.6.1 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate crates.io crate intspan 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e9ea74ea5f1b5c1999dd774da6c2b95921d45cdf745bbf7a1c9243c102d6e78b [INFO] running `Command { std: "docker" "start" "-a" "e9ea74ea5f1b5c1999dd774da6c2b95921d45cdf745bbf7a1c9243c102d6e78b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e9ea74ea5f1b5c1999dd774da6c2b95921d45cdf745bbf7a1c9243c102d6e78b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e9ea74ea5f1b5c1999dd774da6c2b95921d45cdf745bbf7a1c9243c102d6e78b", kill_on_drop: false }` [INFO] [stdout] e9ea74ea5f1b5c1999dd774da6c2b95921d45cdf745bbf7a1c9243c102d6e78b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 318b29e74dfd40cc0751dce228bf7bd4ac0b1db707345021997c0049de6e5ce1 [INFO] running `Command { std: "docker" "start" "-a" "318b29e74dfd40cc0751dce228bf7bd4ac0b1db707345021997c0049de6e5ce1", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.86 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustversion v1.0.6 [INFO] [stderr] Compiling unicode-segmentation v1.9.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling bio v0.30.1 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling indexmap v1.8.0 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling yaml-rust v0.4.5 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling serde_derive v1.0.136 [INFO] [stderr] Compiling thiserror-impl v1.0.30 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling clap_derive v3.1.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling snafu v0.6.10 [INFO] [stderr] Compiling thiserror v1.0.30 [INFO] [stderr] Compiling bio-types v0.12.1 [INFO] [stderr] Compiling clap v3.1.1 [INFO] [stderr] Compiling serde v1.0.136 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling multimap v0.6.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling serde_yaml v0.8.23 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling intspan v0.6.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 27.19s [INFO] running `Command { std: "docker" "inspect" "318b29e74dfd40cc0751dce228bf7bd4ac0b1db707345021997c0049de6e5ce1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "318b29e74dfd40cc0751dce228bf7bd4ac0b1db707345021997c0049de6e5ce1", kill_on_drop: false }` [INFO] [stdout] 318b29e74dfd40cc0751dce228bf7bd4ac0b1db707345021997c0049de6e5ce1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c406a9d9465f15fb99b9fd2380c3bb372c6abaf29a1b569f7e875c604b079a01 [INFO] running `Command { std: "docker" "start" "-a" "c406a9d9465f15fb99b9fd2380c3bb372c6abaf29a1b569f7e875c604b079a01", kill_on_drop: false }` [INFO] [stderr] Compiling escargot v0.4.0 [INFO] [stderr] Compiling predicates-core v1.0.3 [INFO] [stderr] Compiling termtree v0.2.4 [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stderr] Compiling normalize-line-endings v0.3.0 [INFO] [stderr] Compiling float-cmp v0.8.0 [INFO] [stderr] Compiling serde_json v1.0.79 [INFO] [stderr] Compiling predicates-tree v1.0.5 [INFO] [stderr] Compiling predicates v1.0.8 [INFO] [stderr] Compiling assert_cmd v0.11.1 [INFO] [stderr] Compiling intspan v0.6.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.64s [INFO] running `Command { std: "docker" "inspect" "c406a9d9465f15fb99b9fd2380c3bb372c6abaf29a1b569f7e875c604b079a01", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c406a9d9465f15fb99b9fd2380c3bb372c6abaf29a1b569f7e875c604b079a01", kill_on_drop: false }` [INFO] [stdout] c406a9d9465f15fb99b9fd2380c3bb372c6abaf29a1b569f7e875c604b079a01 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] b03ecd299873b51433a3556bc584dc94c8fa4f29e2ed30945c8030ef5ae5c966 [INFO] running `Command { std: "docker" "start" "-a" "b03ecd299873b51433a3556bc584dc94c8fa4f29e2ed30945c8030ef5ae5c966", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.07s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/intspan-ba5e1b38613e6b58) [INFO] [stdout] [INFO] [stdout] running 23 tests [INFO] [stdout] test libs::intspan::binary::test_binary ... ok [INFO] [stdout] test libs::intspan::create::test_create ... ok [INFO] [stdout] test libs::intspan::index::test_index ... ok [INFO] [stdout] test libs::intspan::relation::test_relation ... ok [INFO] [stdout] test libs::intspan::index::test_slice ... ok [INFO] [stdout] test libs::intspan::mutate::test_mutate ... ok [INFO] [stdout] test libs::intspan::span::cover_holes ... ok [INFO] [stdout] test libs::intspan::span::excise_fill ... ok [INFO] [stdout] test libs::overlap::ovlp_line ... ok [INFO] [stdout] test libs::intspan::span::inset ... ok [INFO] [stdout] test libs::overlap::paf_line ... ok [INFO] [stdout] test libs::intspan::create::panic_pair - should panic ... ok [INFO] [stdout] test libs::intspan::create::panic_runlist - should panic ... ok [INFO] [stdout] test libs::intspan::create::panic_runlist_2 - should panic ... ok [INFO] [stdout] test utils::read_write::test_write_lines ... ok [INFO] [stdout] test utils::read_write::test_read_write_runlist ... ok [INFO] [stdout] test libs::intspan::index::panic_at_1 - should panic ... ok [INFO] [stdout] test libs::intspan::index::panic_at_2 - should panic ... ok [INFO] [stdout] test libs::intspan::index::panic_index_1 - should panic ... ok [INFO] [stdout] test libs::intspan::index::panic_at_3 - should panic ... ok [INFO] [stdout] test libs::intspan::index::panic_index_2 - should panic ... ok [INFO] [stdout] test libs::intspan::index::panic_slice_1 - should panic ... ok [INFO] [stdout] test libs::range::fa_headers ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 23 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/far-f8f61310c02de0c2) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/linkr-d9991ba94065c34b) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/ovlpr-d43385bb1161d2e7) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/spanr-7a99a5be7e5fbbfc) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/cli_far.rs (/opt/rustwide/target/debug/deps/cli_far-0451cfb742cd30f4) [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test command_invalid ... ok [INFO] [stdout] test command_size ... ok [INFO] [stdout] test command_some ... ok [INFO] [stdout] test command_size_gz ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running tests/cli_linkr.rs (/opt/rustwide/target/debug/deps/cli_linkr-910e1aebf810639a) [INFO] [stdout] [INFO] [stdout] running 11 tests [INFO] [stdout] test command_filter ... ok [INFO] [stdout] test command_invalid ... ok [INFO] [stdout] test command_filter_3 ... ok [INFO] [stdout] test command_circos_highlight ... ok [INFO] [stdout] test command_circos ... ok [INFO] [stdout] test command_clean_merge ... ok [INFO] [stdout] test command_merge ... ok [INFO] [stdout] test command_clean_bundle ... ok [INFO] [stdout] test command_connect ... ok [INFO] [stdout] test command_clean ... ok [INFO] [stdout] test command_sort ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s [INFO] [stdout] [INFO] [stderr] Running tests/cli_ovlpr.rs (/opt/rustwide/target/debug/deps/cli_ovlpr-2a3fa141043b1395) [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test command_invalid ... ok [INFO] [stdout] test command_paf2ovlp ... ok [INFO] [stdout] test command_restrict ... ok [INFO] [stdout] test command_replace ... ok [INFO] [stdout] test command_replace_reverse ... ok [INFO] [stdout] test command_covered_longest ... ok [INFO] [stdout] test command_covered ... ok [INFO] [stdout] test command_covered_mean ... ok [INFO] [stdout] test command_covered_paf ... ok [INFO] [stdout] test command_covered_base ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.34s [INFO] [stdout] [INFO] [stderr] Running tests/cli_spanr.rs (/opt/rustwide/target/debug/deps/cli_spanr-0a376dc185dad09a) [INFO] [stdout] [INFO] [stdout] running 24 tests [INFO] [stdout] test command_invalid ... ok [INFO] [stdout] test command_genome ... ok [INFO] [stdout] test command_convert ... ok [INFO] [stdout] test command_some ... ok [INFO] [stdout] test command_split ... ok [INFO] [stdout] test file_doesnt_be_needed ... ok [INFO] [stdout] test command_gff ... ok [INFO] [stdout] test command_merge ... ok [INFO] [stdout] test command_combine ... ok [INFO] [stdout] test command_stat_all ... ok [INFO] [stdout] test command_stat ... ok [INFO] [stdout] test command_span ... ok [INFO] [stdout] test command_statop ... ok [INFO] [stdout] test command_statop_all ... ok [INFO] [stdout] test file_doesnt_exist ... ok [INFO] [stdout] test command_span_invalid ... ok [INFO] [stdout] test command_statop_invalid ... ok [INFO] [stdout] test command_split_to ... ok [INFO] [stdout] test command_gff_merge ... ok [INFO] [stdout] test command_compare ... ok [INFO] [stdout] test command_range_invalid ... ok [INFO] [stdout] test command_coverage ... ok [INFO] [stdout] test command_cover ... ok [INFO] [stderr] Doc-tests intspan [INFO] [stdout] test command_range ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 24 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.41s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 21 tests [INFO] [stderr] error: test failed, to rerun pass '--doc' [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `rustdoc --edition=2018 --crate-type lib --crate-name intspan --test /opt/rustwide/workdir/src/lib.rs -L dependency=/opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern assert_cmd=/opt/rustwide/target/debug/deps/libassert_cmd-a6353f9a46e9a79d.rlib --extern bio=/opt/rustwide/target/debug/deps/libbio-342401bd3a619a9a.rlib --extern clap=/opt/rustwide/target/debug/deps/libclap-8d0f4157ad460a1c.rlib --extern flate2=/opt/rustwide/target/debug/deps/libflate2-5be8b7fe24eeaa14.rlib --extern indexmap=/opt/rustwide/target/debug/deps/libindexmap-ad9c53c195bb9989.rlib --extern intspan=/opt/rustwide/target/debug/deps/libintspan-563bf1519729de87.rlib --extern itertools=/opt/rustwide/target/debug/deps/libitertools-05bbdb40dd0adff7.rlib --extern lazy_static=/opt/rustwide/target/debug/deps/liblazy_static-02ff0d0fbc57b9b4.rlib --extern petgraph=/opt/rustwide/target/debug/deps/libpetgraph-a8ae3d3c3e9b18a4.rlib --extern predicates=/opt/rustwide/target/debug/deps/libpredicates-f2bdbac84e66b9bd.rlib --extern regex=/opt/rustwide/target/debug/deps/libregex-1e6307043010ea4b.rlib --extern serde=/opt/rustwide/target/debug/deps/libserde-4eb867ddc033736d.rlib --extern serde_yaml=/opt/rustwide/target/debug/deps/libserde_yaml-39c9114ab599b6de.rlib --extern tempfile=/opt/rustwide/target/debug/deps/libtempfile-90afa75a2b98baa6.rlib -C embed-bitcode=no --error-format human` (signal: 9, SIGKILL: kill) [INFO] running `Command { std: "docker" "inspect" "b03ecd299873b51433a3556bc584dc94c8fa4f29e2ed30945c8030ef5ae5c966", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b03ecd299873b51433a3556bc584dc94c8fa4f29e2ed30945c8030ef5ae5c966", kill_on_drop: false }` [INFO] [stdout] b03ecd299873b51433a3556bc584dc94c8fa4f29e2ed30945c8030ef5ae5c966