[INFO] fetching crate gkl 0.1.1...
[INFO] testing gkl-0.1.1 against 1.59.0 for beta-1.60-1
[INFO] extracting crate gkl 0.1.1 into /workspace/builds/worker-6/source
[INFO] validating manifest of crates.io crate gkl 0.1.1 on toolchain 1.59.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gkl 0.1.1
[INFO] finished tweaking crates.io crate gkl 0.1.1
[INFO] tweaked toml for crates.io crate gkl 0.1.1 written to /workspace/builds/worker-6/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9c59d5c0697c0a142bb1cc35e45d923148fc84ded8eaa0ab4d9da1b0f2f72816
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "9c59d5c0697c0a142bb1cc35e45d923148fc84ded8eaa0ab4d9da1b0f2f72816", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9c59d5c0697c0a142bb1cc35e45d923148fc84ded8eaa0ab4d9da1b0f2f72816", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9c59d5c0697c0a142bb1cc35e45d923148fc84ded8eaa0ab4d9da1b0f2f72816", kill_on_drop: false }`
[INFO] [stdout] 9c59d5c0697c0a142bb1cc35e45d923148fc84ded8eaa0ab4d9da1b0f2f72816
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c223b4627cc90a376b86eaef954ad2c4909f0d46f51a735e0c049091a69e7f24
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "c223b4627cc90a376b86eaef954ad2c4909f0d46f51a735e0c049091a69e7f24", kill_on_drop: false }`
[INFO] [stderr]    Compiling gkl v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 6.53s
[INFO] running `Command { std: "docker" "inspect" "c223b4627cc90a376b86eaef954ad2c4909f0d46f51a735e0c049091a69e7f24", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c223b4627cc90a376b86eaef954ad2c4909f0d46f51a735e0c049091a69e7f24", kill_on_drop: false }`
[INFO] [stdout] c223b4627cc90a376b86eaef954ad2c4909f0d46f51a735e0c049091a69e7f24
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] ba5858d69d1c9feaa8cd34949be02fc0d3505339b38c15a2b78b12f74f4f39ce
[INFO] running `Command { std: "docker" "start" "-a" "ba5858d69d1c9feaa8cd34949be02fc0d3505339b38c15a2b78b12f74f4f39ce", kill_on_drop: false }`
[INFO] [stderr]    Compiling gkl v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 2.47s
[INFO] running `Command { std: "docker" "inspect" "ba5858d69d1c9feaa8cd34949be02fc0d3505339b38c15a2b78b12f74f4f39ce", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ba5858d69d1c9feaa8cd34949be02fc0d3505339b38c15a2b78b12f74f4f39ce", kill_on_drop: false }`
[INFO] [stdout] ba5858d69d1c9feaa8cd34949be02fc0d3505339b38c15a2b78b12f74f4f39ce
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 532c4aff0af129d5fbaf547a0946025cbd7db9a8a5588791ec593754f335e8b9
[INFO] running `Command { std: "docker" "start" "-a" "532c4aff0af129d5fbaf547a0946025cbd7db9a8a5588791ec593754f335e8b9", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.05s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/gkl-bf5da8f854fd6901)
[INFO] [stdout] 
[INFO] [stderr]      Running tests/pairhmm.rs (/opt/rustwide/target/debug/deps/pairhmm-da5f10292f47375c)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test simple ... ok
[INFO] [stderr]      Running tests/smithwaterman.rs (/opt/rustwide/target/debug/deps/smithwaterman-f3bd144c9ddd0e72)
[INFO] [stdout] test data_file ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.26s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test substring_match ... ok
[INFO] [stdout] test indels_at_start_and_end ... ok
[INFO] [stdout] test odd_no_alignment ... ok
[INFO] [stdout] test substring_match_long ... ok
[INFO] [stdout] test two_element ... ok
[INFO] [stdout] test read_aligned_to_ref_complex_alignment ... ok
[INFO] [stdout] test identical_alignments_with_differing_flank_lengths ... ok
[INFO] [stdout] test single_element ... ok
[INFO] [stdout] test degenerate_alignment_with_indels_at_both_ends ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests gkl
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "532c4aff0af129d5fbaf547a0946025cbd7db9a8a5588791ec593754f335e8b9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "532c4aff0af129d5fbaf547a0946025cbd7db9a8a5588791ec593754f335e8b9", kill_on_drop: false }`
[INFO] [stdout] 532c4aff0af129d5fbaf547a0946025cbd7db9a8a5588791ec593754f335e8b9