[INFO] fetching crate fasten 0.3.3... [INFO] testing fasten-0.3.3 against 1.59.0 for beta-1.60-1 [INFO] extracting crate fasten 0.3.3 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate fasten 0.3.3 on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate fasten 0.3.3 [INFO] finished tweaking crates.io crate fasten 0.3.3 [INFO] tweaked toml for crates.io crate fasten 0.3.3 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate crates.io crate fasten 0.3.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 48bc0553dcadc6966d4b10ebba25e83ce43adc5e85d916bc446658d2806588d3 [INFO] running `Command { std: "docker" "start" "-a" "48bc0553dcadc6966d4b10ebba25e83ce43adc5e85d916bc446658d2806588d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "48bc0553dcadc6966d4b10ebba25e83ce43adc5e85d916bc446658d2806588d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "48bc0553dcadc6966d4b10ebba25e83ce43adc5e85d916bc446658d2806588d3", kill_on_drop: false }` [INFO] [stdout] 48bc0553dcadc6966d4b10ebba25e83ce43adc5e85d916bc446658d2806588d3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5e083afe7dd941a9ac9c7092089473d3d55564e3caaf2d95fd2dbf8e7cc7cd28 [INFO] running `Command { std: "docker" "start" "-a" "5e083afe7dd941a9ac9c7092089473d3d55564e3caaf2d95fd2dbf8e7cc7cd28", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.101 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling cc v1.0.69 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling rustc-serialize v0.3.24 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling owning_ref v0.2.4 [INFO] [stderr] Compiling crossbeam v0.2.12 [INFO] [stderr] Compiling smallvec v0.3.4 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling futures v0.1.31 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling smallvec v0.6.14 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling lz4-sys v1.9.2 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling thread-id v3.3.0 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling threadpool v1.8.1 [INFO] [stderr] Compiling parking_lot_core v0.2.14 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling parking_lot v0.3.8 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling multiqueue v0.3.2 [INFO] [stderr] Compiling bam v0.1.4 [INFO] [stderr] Compiling num-bigint v0.1.44 [INFO] [stderr] Compiling num-rational v0.1.42 [INFO] [stderr] Compiling num v0.1.42 [INFO] [stderr] Compiling statistical v0.1.1 [INFO] [stderr] Compiling lz4 v1.23.2 [INFO] [stderr] Compiling fastq v0.6.0 [INFO] [stderr] Compiling fasten v0.3.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 20.92s [INFO] running `Command { std: "docker" "inspect" "5e083afe7dd941a9ac9c7092089473d3d55564e3caaf2d95fd2dbf8e7cc7cd28", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5e083afe7dd941a9ac9c7092089473d3d55564e3caaf2d95fd2dbf8e7cc7cd28", kill_on_drop: false }` [INFO] [stdout] 5e083afe7dd941a9ac9c7092089473d3d55564e3caaf2d95fd2dbf8e7cc7cd28 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5ba707fb79a1a76420fd89256b71c27e17e1609d07f6417403b1f2125c1fa35a [INFO] running `Command { std: "docker" "start" "-a" "5ba707fb79a1a76420fd89256b71c27e17e1609d07f6417403b1f2125c1fa35a", kill_on_drop: false }` [INFO] [stderr] Compiling fasten v0.3.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.26s [INFO] running `Command { std: "docker" "inspect" "5ba707fb79a1a76420fd89256b71c27e17e1609d07f6417403b1f2125c1fa35a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5ba707fb79a1a76420fd89256b71c27e17e1609d07f6417403b1f2125c1fa35a", kill_on_drop: false }` [INFO] [stdout] 5ba707fb79a1a76420fd89256b71c27e17e1609d07f6417403b1f2125c1fa35a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] c6331d52698f019d58a169814f6e9a298cd73aed9100e0c14ede2eaf0426ed91 [INFO] running `Command { std: "docker" "start" "-a" "c6331d52698f019d58a169814f6e9a298cd73aed9100e0c14ede2eaf0426ed91", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten-e3acd163958bd4fe) [INFO] [stdout] running 4 tests [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_clean-08534befc8c2a83a) [INFO] [stdout] test io::fastq::test_the_fast_reader ... ok [INFO] [stdout] test io::fastq::test_the_careful_reader ... ok [INFO] [stdout] test io::seq::test_new_seq ... ok [INFO] [stdout] test io::seq::test_cleanable ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_combine-b254ba985a0b6d64) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_convert-d086148d72ed9991) [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_kmer-abd6f9c4128921d5) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_metrics-3292057f9d67f18e) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_mutate-a31a32441ea6ddd8) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_pe-5aac40631221446f) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_progress-70255cfff5fb77ef) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_quality_filter-d3031e4d1077a616) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_randomize-f56c0388a845061d) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_regex-9e0fc78c3e4821ab) [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_replace-ebcde89549dc239f) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_sample-70c1afc34a2bb02a) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_shuffle-4ae92cc938e364c7) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_straighten-48341ca9e5f035de) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test challenge_dataset ... ok [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_trim-3aad89bb0348b4ac) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fasten_validate-30c516dbf9578ceb) [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stderr] Doc-tests fasten [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "c6331d52698f019d58a169814f6e9a298cd73aed9100e0c14ede2eaf0426ed91", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c6331d52698f019d58a169814f6e9a298cd73aed9100e0c14ede2eaf0426ed91", kill_on_drop: false }` [INFO] [stdout] c6331d52698f019d58a169814f6e9a298cd73aed9100e0c14ede2eaf0426ed91