[INFO] fetching crate checkm 0.1.1... [INFO] testing checkm-0.1.1 against 1.59.0 for beta-1.60-1 [INFO] extracting crate checkm 0.1.1 into /workspace/builds/worker-26/source [INFO] validating manifest of crates.io crate checkm 0.1.1 on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate checkm 0.1.1 [INFO] finished tweaking crates.io crate checkm 0.1.1 [INFO] tweaked toml for crates.io crate checkm 0.1.1 written to /workspace/builds/worker-26/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-26/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-26/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] fc0df4a1fc7a31b0acd536738fea30adf7185ff1f57264f378e895e557b095f0 [INFO] running `Command { std: "docker" "start" "-a" "fc0df4a1fc7a31b0acd536738fea30adf7185ff1f57264f378e895e557b095f0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fc0df4a1fc7a31b0acd536738fea30adf7185ff1f57264f378e895e557b095f0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fc0df4a1fc7a31b0acd536738fea30adf7185ff1f57264f378e895e557b095f0", kill_on_drop: false }` [INFO] [stdout] fc0df4a1fc7a31b0acd536738fea30adf7185ff1f57264f378e895e557b095f0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-26/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-26/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a1f0e6ff330123b488372ac91659f3b72eb9a4d0e1d2900f2cdef36f88608a9f [INFO] running `Command { std: "docker" "start" "-a" "a1f0e6ff330123b488372ac91659f3b72eb9a4d0e1d2900f2cdef36f88608a9f", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling serde v1.0.136 [INFO] [stderr] Compiling libc v0.2.119 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling checkm v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 11.67s [INFO] running `Command { std: "docker" "inspect" "a1f0e6ff330123b488372ac91659f3b72eb9a4d0e1d2900f2cdef36f88608a9f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a1f0e6ff330123b488372ac91659f3b72eb9a4d0e1d2900f2cdef36f88608a9f", kill_on_drop: false }` [INFO] [stdout] a1f0e6ff330123b488372ac91659f3b72eb9a4d0e1d2900f2cdef36f88608a9f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-26/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-26/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 76e8a0b8dc357dc49bc91f9889548d9ef452868c00af5936dab7b6ef84678785 [INFO] running `Command { std: "docker" "start" "-a" "76e8a0b8dc357dc49bc91f9889548d9ef452868c00af5936dab7b6ef84678785", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling checkm v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.36s [INFO] running `Command { std: "docker" "inspect" "76e8a0b8dc357dc49bc91f9889548d9ef452868c00af5936dab7b6ef84678785", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "76e8a0b8dc357dc49bc91f9889548d9ef452868c00af5936dab7b6ef84678785", kill_on_drop: false }` [INFO] [stdout] 76e8a0b8dc357dc49bc91f9889548d9ef452868c00af5936dab7b6ef84678785 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-26/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-26/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] a25bc998564b75129e798caf8fbd94bf92368ff3d283fd13cfbf8853af6c3076 [INFO] running `Command { std: "docker" "start" "-a" "a25bc998564b75129e798caf8fbd94bf92368ff3d283fd13cfbf8853af6c3076", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/checkm-a821c2cda62c4c58) [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test test::test_absolute_path_retrieval ... ok [INFO] [stdout] test test::test_retrieve ... ok [INFO] [stdout] test test::test_good_quality_genome_names ... ok [INFO] [stdout] test test::test_fasta_ordering_4times_min_completeness ... ok [INFO] [stdout] test test::test_ordering_4times ... ok [INFO] [stdout] test test::test_ordering_5times ... ok [INFO] [stdout] test test::test_fasta_ordering_4times ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Doc-tests checkm [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "a25bc998564b75129e798caf8fbd94bf92368ff3d283fd13cfbf8853af6c3076", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a25bc998564b75129e798caf8fbd94bf92368ff3d283fd13cfbf8853af6c3076", kill_on_drop: false }` [INFO] [stdout] a25bc998564b75129e798caf8fbd94bf92368ff3d283fd13cfbf8853af6c3076