[INFO] cloning repository https://github.com/mttmartin/anneal_predictor [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mttmartin/anneal_predictor" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmttmartin%2Fanneal_predictor", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmttmartin%2Fanneal_predictor'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8015bc6eaafedea32d296c1982070e2073c44112 [INFO] testing mttmartin/anneal_predictor against 1.59.0 for beta-1.60-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmttmartin%2Fanneal_predictor" "/workspace/builds/worker-16/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-16/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/mttmartin/anneal_predictor on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/mttmartin/anneal_predictor [INFO] finished tweaking git repo https://github.com/mttmartin/anneal_predictor [INFO] tweaked toml for git repo https://github.com/mttmartin/anneal_predictor written to /workspace/builds/worker-16/source/Cargo.toml [INFO] crate git repo https://github.com/mttmartin/anneal_predictor already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0ca093ec76d9b12661f96ba1891efbb87d7e72b62febe0f59ed2a10e2a37da3a [INFO] running `Command { std: "docker" "start" "-a" "0ca093ec76d9b12661f96ba1891efbb87d7e72b62febe0f59ed2a10e2a37da3a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0ca093ec76d9b12661f96ba1891efbb87d7e72b62febe0f59ed2a10e2a37da3a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0ca093ec76d9b12661f96ba1891efbb87d7e72b62febe0f59ed2a10e2a37da3a", kill_on_drop: false }` [INFO] [stdout] 0ca093ec76d9b12661f96ba1891efbb87d7e72b62febe0f59ed2a10e2a37da3a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 90e1e879bf1ba2cac52baa8ed7c2de513dae7fd41674d95838eeaf6f224dcf31 [INFO] running `Command { std: "docker" "start" "-a" "90e1e879bf1ba2cac52baa8ed7c2de513dae7fd41674d95838eeaf6f224dcf31", kill_on_drop: false }` [INFO] [stderr] Compiling anneal_predictor v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:306:7 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | let mut deltaS = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:10:11 [INFO] [stdout] | [INFO] [stdout] 10 | let mut deltaH = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:278:7 [INFO] [stdout] | [INFO] [stdout] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:282:4 [INFO] [stdout] | [INFO] [stdout] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:284:7 [INFO] [stdout] | [INFO] [stdout] 284 | let deltaH = 9.62; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:285:7 [INFO] [stdout] | [INFO] [stdout] 285 | let deltaS = 17.15/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:286:7 [INFO] [stdout] | [INFO] [stdout] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:289:7 [INFO] [stdout] | [INFO] [stdout] 289 | let deltaH = 0.4184; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:290:7 [INFO] [stdout] | [INFO] [stdout] 290 | let deltaS = -11.72/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:291:7 [INFO] [stdout] | [INFO] [stdout] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `calc_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:299:4 [INFO] [stdout] | [INFO] [stdout] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:300:10 [INFO] [stdout] | [INFO] [stdout] 300 | let mut deltaG = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:303:11 [INFO] [stdout] | [INFO] [stdout] 303 | let mut initiation_deltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:306:11 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `lowest_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:320:5 [INFO] [stdout] | [INFO] [stdout] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:321:11 [INFO] [stdout] | [INFO] [stdout] 321 | let mut lowestDeltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `currentDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:324:8 [INFO] [stdout] | [INFO] [stdout] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stdout] --> src/main.rs:339:6 [INFO] [stdout] | [INFO] [stdout] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 20 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.30s [INFO] running `Command { std: "docker" "inspect" "90e1e879bf1ba2cac52baa8ed7c2de513dae7fd41674d95838eeaf6f224dcf31", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "90e1e879bf1ba2cac52baa8ed7c2de513dae7fd41674d95838eeaf6f224dcf31", kill_on_drop: false }` [INFO] [stdout] 90e1e879bf1ba2cac52baa8ed7c2de513dae7fd41674d95838eeaf6f224dcf31 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 489e146966082c36e8e0279f743e5e439972cf13c32d1c8d0c9aafc4b383ea6f [INFO] running `Command { std: "docker" "start" "-a" "489e146966082c36e8e0279f743e5e439972cf13c32d1c8d0c9aafc4b383ea6f", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling anneal_predictor v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:306:7 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | let mut deltaS = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:10:11 [INFO] [stdout] | [INFO] [stdout] 10 | let mut deltaH = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:278:7 [INFO] [stdout] | [INFO] [stdout] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:282:4 [INFO] [stdout] | [INFO] [stdout] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:284:7 [INFO] [stdout] | [INFO] [stdout] 284 | let deltaH = 9.62; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:285:7 [INFO] [stdout] | [INFO] [stdout] 285 | let deltaS = 17.15/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:286:7 [INFO] [stdout] | [INFO] [stdout] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:289:7 [INFO] [stdout] | [INFO] [stdout] 289 | let deltaH = 0.4184; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:290:7 [INFO] [stdout] | [INFO] [stdout] 290 | let deltaS = -11.72/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:291:7 [INFO] [stdout] | [INFO] [stdout] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `calc_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:299:4 [INFO] [stdout] | [INFO] [stdout] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:300:10 [INFO] [stdout] | [INFO] [stdout] 300 | let mut deltaG = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:303:11 [INFO] [stdout] | [INFO] [stdout] 303 | let mut initiation_deltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:306:11 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `lowest_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:320:5 [INFO] [stdout] | [INFO] [stdout] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:321:11 [INFO] [stdout] | [INFO] [stdout] 321 | let mut lowestDeltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `currentDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:324:8 [INFO] [stdout] | [INFO] [stdout] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stdout] --> src/main.rs:339:6 [INFO] [stdout] | [INFO] [stdout] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stdout] --> src/main.rs:354:7 [INFO] [stdout] | [INFO] [stdout] 354 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 21 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.46s [INFO] running `Command { std: "docker" "inspect" "489e146966082c36e8e0279f743e5e439972cf13c32d1c8d0c9aafc4b383ea6f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "489e146966082c36e8e0279f743e5e439972cf13c32d1c8d0c9aafc4b383ea6f", kill_on_drop: false }` [INFO] [stdout] 489e146966082c36e8e0279f743e5e439972cf13c32d1c8d0c9aafc4b383ea6f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 7c11fb9eecc092b9c395dc7889b6ab6fff8950139c6e6f375a01bdb16f9a66c5 [INFO] running `Command { std: "docker" "start" "-a" "7c11fb9eecc092b9c395dc7889b6ab6fff8950139c6e6f375a01bdb16f9a66c5", kill_on_drop: false }` [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:306:7 [INFO] [stderr] | [INFO] [stderr] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stderr] --> src/main.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:9:11 [INFO] [stderr] | [INFO] [stderr] 9 | let mut deltaS = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:10:11 [INFO] [stderr] | [INFO] [stderr] 10 | let mut deltaH = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:278:7 [INFO] [stderr] | [INFO] [stderr] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stderr] [INFO] [stderr] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:282:4 [INFO] [stderr] | [INFO] [stderr] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:284:7 [INFO] [stderr] | [INFO] [stderr] 284 | let deltaH = 9.62; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:285:7 [INFO] [stderr] | [INFO] [stderr] 285 | let deltaS = 17.15/1000.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaGinit` should have a snake case name [INFO] [stderr] --> src/main.rs:286:7 [INFO] [stderr] | [INFO] [stderr] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:289:7 [INFO] [stderr] | [INFO] [stderr] 289 | let deltaH = 0.4184; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:290:7 [INFO] [stderr] | [INFO] [stderr] 290 | let deltaS = -11.72/1000.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaGinit` should have a snake case name [INFO] [stderr] --> src/main.rs:291:7 [INFO] [stderr] | [INFO] [stderr] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stderr] [INFO] [stderr] warning: method `calc_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:299:4 [INFO] [stderr] | [INFO] [stderr] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stderr] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:300:10 [INFO] [stderr] | [INFO] [stderr] 300 | let mut deltaG = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:303:11 [INFO] [stderr] | [INFO] [stderr] 303 | let mut initiation_deltaG = 0.0; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:306:11 [INFO] [stderr] | [INFO] [stderr] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stderr] [INFO] [stderr] warning: method `lowest_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:320:5 [INFO] [stderr] | [INFO] [stderr] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:321:11 [INFO] [stderr] | [INFO] [stderr] 321 | let mut lowestDeltaG = 0.0; [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `currentDeltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:324:8 [INFO] [stderr] | [INFO] [stderr] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stderr] --> src/main.rs:339:6 [INFO] [stderr] | [INFO] [stderr] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stderr] --> src/main.rs:354:7 [INFO] [stderr] | [INFO] [stderr] 354 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: `anneal_predictor` (bin "anneal_predictor" test) generated 21 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.00s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/anneal_predictor-43f0360d9579fdcd) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test tests::known_example ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::known_example stdout ---- [INFO] [stdout] template piece: "CGTTGA" [INFO] [stdout] thread 'tests::known_example' panicked at 'assertion failed: lowest_delta_G <= acceptable_range.start &&\n lowest_delta_G > acceptable_range.end', src/main.rs:356:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5565f986b7ac - std::backtrace_rs::backtrace::libunwind::trace::h91c465e73bf6c785 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stdout] 1: 0x5565f986b7ac - std::backtrace_rs::backtrace::trace_unsynchronized::hae9da36f5d58b5f3 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x5565f986b7ac - std::sys_common::backtrace::_print_fmt::h7f499fa126a7effb [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x5565f986b7ac - ::fmt::h3e2b509ce2ce6007 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x5565f989109c - core::fmt::write::h753c7571fa063ecb [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/fmt/mod.rs:1168:17 [INFO] [stdout] 5: 0x5565f9866a13 - std::io::Write::write_fmt::hb649ab67f71b6655 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/io/mod.rs:1660:15 [INFO] [stdout] 6: 0x5565f986de82 - std::sys_common::backtrace::_print::h64941a6fc8b0ed9b [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x5565f986de82 - std::sys_common::backtrace::print::hcf25e43e1a9b0766 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x5565f986de82 - std::panicking::default_hook::{{closure}}::h78d3e6cf97fc623d [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:211:50 [INFO] [stdout] 9: 0x5565f986dad1 - std::panicking::default_hook::hda898f8d3ad1a5ae [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:225:9 [INFO] [stdout] 10: 0x5565f986e4d3 - std::panicking::rust_panic_with_hook::h1a5ea2d6c23051aa [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:606:17 [INFO] [stdout] 11: 0x5565f986e1c2 - std::panicking::begin_panic_handler::{{closure}}::h07f549390938b73f [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:500:13 [INFO] [stdout] 12: 0x5565f986bc54 - std::sys_common::backtrace::__rust_end_short_backtrace::h5ec3758a92cfb00d [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stdout] 13: 0x5565f986df29 - rust_begin_unwind [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:498:5 [INFO] [stdout] 14: 0x5565f980bdd1 - core::panicking::panic_fmt::h3a79a6a99affe1d5 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panicking.rs:116:14 [INFO] [stdout] 15: 0x5565f980bd1d - core::panicking::panic::h97167cd315d19cd4 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panicking.rs:48:5 [INFO] [stdout] 16: 0x5565f9812854 - anneal_predictor::tests::known_example::h045227fb67a0d2b6 [INFO] [stdout] at /opt/rustwide/workdir/src/main.rs:356:3 [INFO] [stdout] 17: 0x5565f981267a - anneal_predictor::tests::known_example::{{closure}}::hf7060bf406b8f725 [INFO] [stdout] at /opt/rustwide/workdir/src/main.rs:349:2 [INFO] [stdout] 18: 0x5565f98124de - core::ops::function::FnOnce::call_once::h9144d9fc034d536a [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 19: 0x5565f9841703 - core::ops::function::FnOnce::call_once::h1845a80638abc06e [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 20: 0x5565f9841703 - test::__rust_begin_short_backtrace::h4f56ccea01b9889f [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/test/src/lib.rs:574:5 [INFO] [stdout] 21: 0x5565f98403ef - as core::ops::function::FnOnce>::call_once::h5afedf14a39ffa74 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/alloc/src/boxed.rs:1854:9 [INFO] [stdout] 22: 0x5565f98403ef - as core::ops::function::FnOnce<()>>::call_once::hd5aaa1b551e9ce71 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 23: 0x5565f98403ef - std::panicking::try::do_call::h316eebee63f96d32 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:406:40 [INFO] [stdout] 24: 0x5565f98403ef - std::panicking::try::h662e31e84dd7ce52 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:370:19 [INFO] [stdout] 25: 0x5565f98403ef - std::panic::catch_unwind::h129c1b23f076663f [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panic.rs:133:14 [INFO] [stdout] 26: 0x5565f98403ef - test::run_test_in_process::h51d800d572f878ef [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/test/src/lib.rs:597:18 [INFO] [stdout] 27: 0x5565f98403ef - test::run_test::run_test_inner::{{closure}}::h71a47db430260854 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/test/src/lib.rs:491:39 [INFO] [stdout] 28: 0x5565f98497b1 - test::run_test::run_test_inner::{{closure}}::h02edd5b3e2dab52a [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/test/src/lib.rs:518:37 [INFO] [stdout] 29: 0x5565f98497b1 - std::sys_common::backtrace::__rust_begin_short_backtrace::h0838cfc8b0e995ec [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stdout] 30: 0x5565f981623f - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h4c2725d7078043cd [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/thread/mod.rs:477:17 [INFO] [stdout] 31: 0x5565f981623f - as core::ops::function::FnOnce<()>>::call_once::hdf1aa612eed87270 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 32: 0x5565f981623f - std::panicking::try::do_call::hc72f8de3706d18d6 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:406:40 [INFO] [stdout] 33: 0x5565f981623f - std::panicking::try::h63f01f54dbd0fb87 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:370:19 [INFO] [stdout] 34: 0x5565f981623f - std::panic::catch_unwind::h58bc464ae9b26453 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panic.rs:133:14 [INFO] [stdout] 35: 0x5565f981623f - std::thread::Builder::spawn_unchecked::{{closure}}::h6c065e19513e33e3 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/thread/mod.rs:476:30 [INFO] [stdout] 36: 0x5565f981623f - core::ops::function::FnOnce::call_once{{vtable.shim}}::hd143450c74f35c32 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 37: 0x5565f9874053 - as core::ops::function::FnOnce>::call_once::h49b6c7c5155a2296 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/alloc/src/boxed.rs:1854:9 [INFO] [stdout] 38: 0x5565f9874053 - as core::ops::function::FnOnce>::call_once::ha8b5234bfeb15105 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/alloc/src/boxed.rs:1854:9 [INFO] [stdout] 39: 0x5565f9874053 - std::sys::unix::thread::Thread::new::thread_start::h6f207dd842d64859 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys/unix/thread.rs:108:17 [INFO] [stdout] 40: 0x7fac892cc609 - start_thread [INFO] [stdout] 41: 0x7fac8909e293 - clone [INFO] [stdout] 42: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::known_example [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--bin anneal_predictor' [INFO] running `Command { std: "docker" "inspect" "7c11fb9eecc092b9c395dc7889b6ab6fff8950139c6e6f375a01bdb16f9a66c5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7c11fb9eecc092b9c395dc7889b6ab6fff8950139c6e6f375a01bdb16f9a66c5", kill_on_drop: false }` [INFO] [stdout] 7c11fb9eecc092b9c395dc7889b6ab6fff8950139c6e6f375a01bdb16f9a66c5