[INFO] cloning repository https://github.com/mooreryan/bio_ballyhoo
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mooreryan/bio_ballyhoo" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4895a9c2f64f3443dbc032002a5d6a371a1062d0
[INFO] testing mooreryan/bio_ballyhoo against 1.59.0 for beta-1.60-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo" "/workspace/builds/worker-2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mooreryan/bio_ballyhoo on toolchain 1.59.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/mooreryan/bio_ballyhoo
[INFO] finished tweaking git repo https://github.com/mooreryan/bio_ballyhoo
[INFO] tweaked toml for git repo https://github.com/mooreryan/bio_ballyhoo written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] crate git repo https://github.com/mooreryan/bio_ballyhoo already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 95a525af057cb7dc6dadddac68bc6f0c24cec1407228a43f5ca4a59c0fab9fe8
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "95a525af057cb7dc6dadddac68bc6f0c24cec1407228a43f5ca4a59c0fab9fe8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "95a525af057cb7dc6dadddac68bc6f0c24cec1407228a43f5ca4a59c0fab9fe8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "95a525af057cb7dc6dadddac68bc6f0c24cec1407228a43f5ca4a59c0fab9fe8", kill_on_drop: false }`
[INFO] [stdout] 95a525af057cb7dc6dadddac68bc6f0c24cec1407228a43f5ca4a59c0fab9fe8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 93f52881ca68eeb4d16426350fec1607a941eff30ab2081df4aa339efa72e10f
[INFO] running `Command { std: "docker" "start" "-a" "93f52881ca68eeb4d16426350fec1607a941eff30ab2081df4aa339efa72e10f", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.60
[INFO] [stderr]    Compiling libc v0.2.86
[INFO] [stderr]    Compiling serde v1.0.123
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling hashbrown v0.9.1
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling number_prefix v0.3.0
[INFO] [stderr]    Compiling thread_local v1.1.3
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling indexmap v1.6.1
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling regex v1.4.3
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling terminal_size v0.1.16
[INFO] [stderr]    Compiling getrandom v0.2.2
[INFO] [stderr]    Compiling rand_core v0.6.2
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.3.0
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling console v0.14.0
[INFO] [stderr]    Compiling rand v0.8.3
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling indicatif v0.15.0
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling serde_derive v1.0.123
[INFO] [stderr]    Compiling structopt-derive v0.4.14
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling enum-map v0.6.4
[INFO] [stderr]    Compiling snafu v0.6.10
[INFO] [stderr]    Compiling bio-types v0.10.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.15
[INFO] [stderr]    Compiling multimap v0.8.2
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling csv v1.1.5
[INFO] [stderr]    Compiling structopt v0.3.21
[INFO] [stderr]    Compiling make_reads v0.1.0 (/opt/rustwide/workdir/make_reads)
[INFO] [stderr]    Compiling msa_pairwise v0.2.0 (/opt/rustwide/workdir/msa_pairwise_identity)
[INFO] [stderr]    Compiling derep v0.1.0 (/opt/rustwide/workdir/derep)
[INFO] [stderr]    Compiling simple_headers v0.1.0 (/opt/rustwide/workdir/simple_headers)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 07s
[INFO] running `Command { std: "docker" "inspect" "93f52881ca68eeb4d16426350fec1607a941eff30ab2081df4aa339efa72e10f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "93f52881ca68eeb4d16426350fec1607a941eff30ab2081df4aa339efa72e10f", kill_on_drop: false }`
[INFO] [stdout] 93f52881ca68eeb4d16426350fec1607a941eff30ab2081df4aa339efa72e10f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 41f8f3b47449366db43cc55c15b8878c08c041054e3ff3922aa4316e2ce25359
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "41f8f3b47449366db43cc55c15b8878c08c041054e3ff3922aa4316e2ce25359", kill_on_drop: false }`
[INFO] [stderr]    Compiling msa_pairwise v0.2.0 (/opt/rustwide/workdir/msa_pairwise_identity)
[INFO] [stderr]    Compiling derep v0.1.0 (/opt/rustwide/workdir/derep)
[INFO] [stderr]    Compiling make_reads v0.1.0 (/opt/rustwide/workdir/make_reads)
[INFO] [stderr]    Compiling simple_headers v0.1.0 (/opt/rustwide/workdir/simple_headers)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 5.70s
[INFO] running `Command { std: "docker" "inspect" "41f8f3b47449366db43cc55c15b8878c08c041054e3ff3922aa4316e2ce25359", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "41f8f3b47449366db43cc55c15b8878c08c041054e3ff3922aa4316e2ce25359", kill_on_drop: false }`
[INFO] [stdout] 41f8f3b47449366db43cc55c15b8878c08c041054e3ff3922aa4316e2ce25359
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 1f2d4f98af55eca421ae81cc1000126a83a8e93c0dfaaf7dab6dbb9935690b60
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "1f2d4f98af55eca421ae81cc1000126a83a8e93c0dfaaf7dab6dbb9935690b60", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.18s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/derep-c7d98ea3d89840ff)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/derep-821224f1f9364df2)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/make_reads-a7cb518fb3b9ee84)
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/make_reads-b1e83152f665b1b3)
[INFO] [stdout] running 0 tests
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/msa_pairwise-f9f858bd1f768501)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/msa_pairwise-7714100b65315fae)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/simple_headers-082141b0cc01e19c)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests derep
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests make_reads
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests msa_pairwise
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "1f2d4f98af55eca421ae81cc1000126a83a8e93c0dfaaf7dab6dbb9935690b60", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1f2d4f98af55eca421ae81cc1000126a83a8e93c0dfaaf7dab6dbb9935690b60", kill_on_drop: false }`
[INFO] [stdout] 1f2d4f98af55eca421ae81cc1000126a83a8e93c0dfaaf7dab6dbb9935690b60