[INFO] cloning repository https://github.com/chfi/rust-qtlreaper [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chfi/rust-qtlreaper" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frust-qtlreaper", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frust-qtlreaper'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8d650921ec4aec63c42068de58b91579228f57b1 [INFO] testing chfi/rust-qtlreaper against 1.59.0 for beta-1.60-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frust-qtlreaper" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/chfi/rust-qtlreaper on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/chfi/rust-qtlreaper [INFO] finished tweaking git repo https://github.com/chfi/rust-qtlreaper [INFO] tweaked toml for git repo https://github.com/chfi/rust-qtlreaper written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/chfi/rust-qtlreaper already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f0f4ced4c76ac736d4b4dd02d5c1cd73f4f253cae8b9cbccfd1df076e48178c6 [INFO] running `Command { std: "docker" "start" "-a" "f0f4ced4c76ac736d4b4dd02d5c1cd73f4f253cae8b9cbccfd1df076e48178c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f0f4ced4c76ac736d4b4dd02d5c1cd73f4f253cae8b9cbccfd1df076e48178c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f0f4ced4c76ac736d4b4dd02d5c1cd73f4f253cae8b9cbccfd1df076e48178c6", kill_on_drop: false }` [INFO] [stdout] f0f4ced4c76ac736d4b4dd02d5c1cd73f4f253cae8b9cbccfd1df076e48178c6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9116ec412d0ba1f5e746bb76d6732557298bbf9ac88dc9ce10c01b69f5229bee [INFO] running `Command { std: "docker" "start" "-a" "9116ec412d0ba1f5e746bb76d6732557298bbf9ac88dc9ce10c01b69f5229bee", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v0.1.6 [INFO] [stderr] Compiling libc v0.2.54 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling syn v0.15.34 [INFO] [stderr] Compiling arrayvec v0.4.10 [INFO] [stderr] Compiling nodrop v0.1.13 [INFO] [stderr] Compiling scopeguard v0.3.3 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling memoffset v0.2.1 [INFO] [stderr] Compiling lazy_static v1.3.0 [INFO] [stderr] Compiling serde v1.0.91 [INFO] [stderr] Compiling either v1.5.2 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling ryu v0.2.8 [INFO] [stderr] Compiling unicode-segmentation v1.3.0 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling bitflags v1.0.4 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling crossbeam-utils v0.2.2 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling num_cpus v1.10.0 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling crossbeam-epoch v0.3.1 [INFO] [stderr] Compiling crossbeam-deque v0.2.0 [INFO] [stderr] Compiling serde_derive v1.0.91 [INFO] [stderr] Compiling structopt-derive v0.2.15 [INFO] [stderr] Compiling structopt v0.2.15 [INFO] [stderr] Compiling serde_json v1.0.39 [INFO] [stderr] Compiling qtlreaper v0.1.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/lib.rs:5:22 [INFO] [stdout] | [INFO] [stdout] 5 | #[macro_use(s, azip, array)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stdout] --> src/regression.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `regression_2n_variance` [INFO] [stdout] --> src/regression.rs:250:4 [INFO] [stdout] | [INFO] [stdout] 250 | fn regression_2n_variance( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_bootstrap` [INFO] [stdout] --> src/main.rs:67:5 [INFO] [stdout] | [INFO] [stdout] 67 | n_bootstrap: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 26.02s [INFO] running `Command { std: "docker" "inspect" "9116ec412d0ba1f5e746bb76d6732557298bbf9ac88dc9ce10c01b69f5229bee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9116ec412d0ba1f5e746bb76d6732557298bbf9ac88dc9ce10c01b69f5229bee", kill_on_drop: false }` [INFO] [stdout] 9116ec412d0ba1f5e746bb76d6732557298bbf9ac88dc9ce10c01b69f5229bee [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e9926aa02155c4127a6915e5c8902a03c773a41a6f96ea00ab268c87daf08d19 [INFO] running `Command { std: "docker" "start" "-a" "e9926aa02155c4127a6915e5c8902a03c773a41a6f96ea00ab268c87daf08d19", kill_on_drop: false }` [INFO] [stderr] Compiling qtlreaper v0.1.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/lib.rs:5:22 [INFO] [stdout] | [INFO] [stdout] 5 | #[macro_use(s, azip, array)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stdout] --> src/regression.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `regression_2n_variance` [INFO] [stdout] --> src/regression.rs:250:4 [INFO] [stdout] | [INFO] [stdout] 250 | fn regression_2n_variance( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_bootstrap` [INFO] [stdout] --> src/main.rs:67:5 [INFO] [stdout] | [INFO] [stdout] 67 | n_bootstrap: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stdout] --> src/regression.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `regression_2n_variance` [INFO] [stdout] --> src/regression.rs:250:4 [INFO] [stdout] | [INFO] [stdout] 250 | fn regression_2n_variance( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.93s [INFO] running `Command { std: "docker" "inspect" "e9926aa02155c4127a6915e5c8902a03c773a41a6f96ea00ab268c87daf08d19", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e9926aa02155c4127a6915e5c8902a03c773a41a6f96ea00ab268c87daf08d19", kill_on_drop: false }` [INFO] [stdout] e9926aa02155c4127a6915e5c8902a03c773a41a6f96ea00ab268c87daf08d19 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] a3e6b044da2f523b419fe639475fdf41f8da58921bfb58265cbb5a2bfced638e [INFO] running `Command { std: "docker" "start" "-a" "a3e6b044da2f523b419fe639475fdf41f8da58921bfb58265cbb5a2bfced638e", kill_on_drop: false }` [INFO] [stderr] warning: unused `#[macro_use]` import [INFO] [stderr] --> src/lib.rs:5:22 [INFO] [stderr] | [INFO] [stderr] 5 | #[macro_use(s, azip, array)] [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stderr] --> src/regression.rs:5:1 [INFO] [stderr] | [INFO] [stderr] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `regression_2n_variance` [INFO] [stderr] --> src/regression.rs:250:4 [INFO] [stderr] | [INFO] [stderr] 250 | fn regression_2n_variance( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `qtlreaper` (lib) generated 3 warnings [INFO] [stderr] warning: `qtlreaper` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] warning: field is never read: `n_bootstrap` [INFO] [stderr] --> src/main.rs:67:5 [INFO] [stderr] | [INFO] [stderr] 67 | n_bootstrap: usize, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `qtlreaper` (bin "qtlreaper" test) generated 1 warning [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.10s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/qtlreaper-858511d5cba89b96) [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test geneobject::tests::it_can_parse_metadata ... ok [INFO] [stdout] test geneobject::tests::it_can_parse_header ... ok [INFO] [stdout] test geneobject::tests::it_can_estimate_unknown_genotypes ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- geneobject::tests::it_can_estimate_unknown_genotypes stdout ---- [INFO] [stdout] thread 'geneobject::tests::it_can_estimate_unknown_genotypes' panicked at 'assertion failed: `(left == right)` [INFO] [stdout] left: `[Locus { dominance: None, genotype: [Mat, Mat, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-1.0, -1.0, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Pat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-0.18523506128077272, 1.0, 0.9616255554798838] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.18906668494617707, 0.3421367343627406, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.5826065314914579, -0.32233300305265566, 0.3223330030526552] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -0.34213673436274084] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Mat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]`, [INFO] [stdout] right: `[Locus { dominance: None, genotype: [Mat, Mat, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-1.0, -1.0, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Pat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-0.18523506128077272, 1.0, 0.9616255554798838] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.18906668494617707, 0.3421367343627405, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.5826065314914579, -0.3223330030526561, 0.3223330030526552] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -0.34213673436274084] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Mat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]`', src/geneobject.rs:895:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x562d74e8229c - std::backtrace_rs::backtrace::libunwind::trace::h91c465e73bf6c785 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stdout] 1: 0x562d74e8229c - std::backtrace_rs::backtrace::trace_unsynchronized::hae9da36f5d58b5f3 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x562d74e8229c - std::sys_common::backtrace::_print_fmt::h7f499fa126a7effb [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x562d74e8229c - ::fmt::h3e2b509ce2ce6007 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x562d74ea800c - core::fmt::write::h753c7571fa063ecb [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/fmt/mod.rs:1168:17 [INFO] [stdout] 5: 0x562d74e7d503 - std::io::Write::write_fmt::hb649ab67f71b6655 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/io/mod.rs:1660:15 [INFO] [stdout] 6: 0x562d74e84972 - std::sys_common::backtrace::_print::h64941a6fc8b0ed9b [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x562d74e84972 - std::sys_common::backtrace::print::hcf25e43e1a9b0766 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x562d74e84972 - std::panicking::default_hook::{{closure}}::h78d3e6cf97fc623d [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:211:50 [INFO] [stdout] 9: 0x562d74e845c1 - std::panicking::default_hook::hda898f8d3ad1a5ae [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:225:9 [INFO] [stdout] 10: 0x562d74e84fc3 - std::panicking::rust_panic_with_hook::h1a5ea2d6c23051aa [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:606:17 [INFO] [stdout] 11: 0x562d74e84ce0 - std::panicking::begin_panic_handler::{{closure}}::h07f549390938b73f [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:502:13 [INFO] [stdout] 12: 0x562d74e82744 - std::sys_common::backtrace::__rust_end_short_backtrace::h5ec3758a92cfb00d [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stdout] 13: 0x562d74e84a19 - rust_begin_unwind [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:498:5 [INFO] [stdout] 14: 0x562d74de9dd1 - core::panicking::panic_fmt::h3a79a6a99affe1d5 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panicking.rs:116:14 [INFO] [stdout] 15: 0x562d74ea6918 - core::panicking::assert_failed_inner::h07aa75cd18bc760d [INFO] [stdout] 16: 0x562d74e092fa - core::panicking::assert_failed::h82e5e61cdca93d83 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panicking.rs:154:5 [INFO] [stdout] 17: 0x562d74e07c6c - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::h0d13db02511aff19 [INFO] [stdout] at /opt/rustwide/workdir/src/geneobject.rs:895:9 [INFO] [stdout] 18: 0x562d74e0564a - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::{{closure}}::ha8bd188ebd8871a1 [INFO] [stdout] at /opt/rustwide/workdir/src/geneobject.rs:808:5 [INFO] [stdout] 19: 0x562d74e126fe - core::ops::function::FnOnce::call_once::hb75a0f60bfdd62f5 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 20: 0x562d74e44de3 - core::ops::function::FnOnce::call_once::h1845a80638abc06e [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x562d74e44de3 - test::__rust_begin_short_backtrace::h4f56ccea01b9889f [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/test/src/lib.rs:574:5 [INFO] [stdout] 22: 0x562d74e43acf - as core::ops::function::FnOnce>::call_once::h5afedf14a39ffa74 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/alloc/src/boxed.rs:1854:9 [INFO] [stdout] 23: 0x562d74e43acf - as core::ops::function::FnOnce<()>>::call_once::hd5aaa1b551e9ce71 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 24: 0x562d74e43acf - std::panicking::try::do_call::h316eebee63f96d32 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:406:40 [INFO] [stdout] 25: 0x562d74e43acf - std::panicking::try::h662e31e84dd7ce52 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:370:19 [INFO] [stdout] 26: 0x562d74e43acf - std::panic::catch_unwind::h129c1b23f076663f [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panic.rs:133:14 [INFO] [stdout] 27: 0x562d74e43acf - test::run_test_in_process::h51d800d572f878ef [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/test/src/lib.rs:597:18 [INFO] [stdout] 28: 0x562d74e43acf - test::run_test::run_test_inner::{{closure}}::h71a47db430260854 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/test/src/lib.rs:491:39 [INFO] [stdout] 29: 0x562d74e4ce91 - test::run_test::run_test_inner::{{closure}}::h02edd5b3e2dab52a [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/test/src/lib.rs:518:37 [INFO] [stdout] 30: 0x562d74e4ce91 - std::sys_common::backtrace::__rust_begin_short_backtrace::h0838cfc8b0e995ec [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stdout] 31: 0x562d74e1991f - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h4c2725d7078043cd [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/thread/mod.rs:477:17 [INFO] [stdout] 32: 0x562d74e1991f - as core::ops::function::FnOnce<()>>::call_once::hdf1aa612eed87270 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 33: 0x562d74e1991f - std::panicking::try::do_call::hc72f8de3706d18d6 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:406:40 [INFO] [stdout] 34: 0x562d74e1991f - std::panicking::try::h63f01f54dbd0fb87 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:370:19 [INFO] [stdout] 35: 0x562d74e1991f - std::panic::catch_unwind::h58bc464ae9b26453 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panic.rs:133:14 [INFO] [stdout] 36: 0x562d74e1991f - std::thread::Builder::spawn_unchecked::{{closure}}::h6c065e19513e33e3 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/thread/mod.rs:476:30 [INFO] [stdout] 37: 0x562d74e1991f - core::ops::function::FnOnce::call_once{{vtable.shim}}::hd143450c74f35c32 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 38: 0x562d74e8ab43 - as core::ops::function::FnOnce>::call_once::h49b6c7c5155a2296 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/alloc/src/boxed.rs:1854:9 [INFO] [stdout] 39: 0x562d74e8ab43 - as core::ops::function::FnOnce>::call_once::ha8b5234bfeb15105 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/alloc/src/boxed.rs:1854:9 [INFO] [stdout] 40: 0x562d74e8ab43 - std::sys::unix::thread::Thread::new::thread_start::h6f207dd842d64859 [INFO] [stdout] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys/unix/thread.rs:108:17 [INFO] [stdout] 41: 0x7f69f4701609 - start_thread [INFO] [stdout] 42: 0x7f69f44d3293 - clone [INFO] [stdout] 43: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] geneobject::tests::it_can_estimate_unknown_genotypes [INFO] [stdout] [INFO] [stdout] test result: FAILED. 2 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `Command { std: "docker" "inspect" "a3e6b044da2f523b419fe639475fdf41f8da58921bfb58265cbb5a2bfced638e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a3e6b044da2f523b419fe639475fdf41f8da58921bfb58265cbb5a2bfced638e", kill_on_drop: false }` [INFO] [stdout] a3e6b044da2f523b419fe639475fdf41f8da58921bfb58265cbb5a2bfced638e