[INFO] cloning repository https://github.com/amsesk/protein2contig [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/amsesk/protein2contig" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] d2c1b32d69b4e995f0f4fa3bfc6735cd60222d8d [INFO] testing amsesk/protein2contig against 1.59.0 for beta-1.60-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig" "/workspace/builds/worker-17/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-17/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/amsesk/protein2contig on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/amsesk/protein2contig [INFO] finished tweaking git repo https://github.com/amsesk/protein2contig [INFO] tweaked toml for git repo https://github.com/amsesk/protein2contig written to /workspace/builds/worker-17/source/Cargo.toml [INFO] crate git repo https://github.com/amsesk/protein2contig already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded snafu-derive v0.6.8 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded statrs v0.12.0 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded ndarray v0.13.1 [INFO] [stderr] Downloaded bytecount v0.6.0 [INFO] [stderr] Downloaded derive-new v0.5.8 [INFO] [stderr] Downloaded bio-types v0.6.0 [INFO] [stderr] Downloaded snafu v0.6.8 [INFO] [stderr] Downloaded getset v0.0.9 [INFO] [stderr] Downloaded multimap v0.6.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-17/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-17/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e01f4a465a34df74f4615aabd06ce25e0be82fafecf0b956265b1503a52d236c [INFO] running `Command { std: "docker" "start" "-a" "e01f4a465a34df74f4615aabd06ce25e0be82fafecf0b956265b1503a52d236c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e01f4a465a34df74f4615aabd06ce25e0be82fafecf0b956265b1503a52d236c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e01f4a465a34df74f4615aabd06ce25e0be82fafecf0b956265b1503a52d236c", kill_on_drop: false }` [INFO] [stdout] e01f4a465a34df74f4615aabd06ce25e0be82fafecf0b956265b1503a52d236c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-17/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-17/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] dd4986536151b65722fd57b63ab4c4bcf6043dcb8ec837eb32f3b0a53556c87a [INFO] running `Command { std: "docker" "start" "-a" "dd4986536151b65722fd57b63ab4c4bcf6043dcb8ec837eb32f3b0a53556c87a", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.12 [INFO] [stderr] Compiling syn v1.0.20 [INFO] [stderr] Compiling serde v1.0.110 [INFO] [stderr] Compiling libc v0.2.70 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling ryu v1.0.4 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling bio v0.30.1-alpha.0 (https://github.com/rust-bio/rust-bio#0fe46244) [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Compiling os_str_bytes v2.3.1 [INFO] [stderr] Compiling bytecount v0.6.0 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling proc-macro-error-attr v0.4.12 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling proc-macro-error v0.4.12 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling indexmap v1.3.2 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling quote v1.0.4 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling regex v1.3.7 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling syn-mid v0.5.0 [INFO] [stderr] Compiling serde_derive v1.0.110 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling snafu-derive v0.6.8 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling clap_derive v3.0.0-beta.1 [INFO] [stderr] Compiling snafu v0.6.8 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling multimap v0.6.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling clap v3.0.0-beta.1 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling protein2contig v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 24.55s [INFO] running `Command { std: "docker" "inspect" "dd4986536151b65722fd57b63ab4c4bcf6043dcb8ec837eb32f3b0a53556c87a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dd4986536151b65722fd57b63ab4c4bcf6043dcb8ec837eb32f3b0a53556c87a", kill_on_drop: false }` [INFO] [stdout] dd4986536151b65722fd57b63ab4c4bcf6043dcb8ec837eb32f3b0a53556c87a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-17/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-17/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5d3d227db5bf70fd9740f9d35a9aa911f07aafe1401aa70a9f0f6ec3925e2faf [INFO] running `Command { std: "docker" "start" "-a" "5d3d227db5bf70fd9740f9d35a9aa911f07aafe1401aa70a9f0f6ec3925e2faf", kill_on_drop: false }` [INFO] [stderr] Compiling protein2contig v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.50s [INFO] running `Command { std: "docker" "inspect" "5d3d227db5bf70fd9740f9d35a9aa911f07aafe1401aa70a9f0f6ec3925e2faf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5d3d227db5bf70fd9740f9d35a9aa911f07aafe1401aa70a9f0f6ec3925e2faf", kill_on_drop: false }` [INFO] [stdout] 5d3d227db5bf70fd9740f9d35a9aa911f07aafe1401aa70a9f0f6ec3925e2faf [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-17/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-17/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] c71a37eb93f41578124d573434d8dbad5331c33ba0efbdf4401d3f089859a90c [INFO] running `Command { std: "docker" "start" "-a" "c71a37eb93f41578124d573434d8dbad5331c33ba0efbdf4401d3f089859a90c", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/protein2contig-c53043370f3884f7) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/protein2contig-ded595c045970403) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests protein2contig [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "c71a37eb93f41578124d573434d8dbad5331c33ba0efbdf4401d3f089859a90c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c71a37eb93f41578124d573434d8dbad5331c33ba0efbdf4401d3f089859a90c", kill_on_drop: false }` [INFO] [stdout] c71a37eb93f41578124d573434d8dbad5331c33ba0efbdf4401d3f089859a90c