[INFO] cloning repository https://github.com/GuoHao150/upgma [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/GuoHao150/upgma" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FGuoHao150%2Fupgma", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FGuoHao150%2Fupgma'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 557f91c93002e17dbdb88cea67f0904fd441f27b [INFO] testing GuoHao150/upgma against 1.59.0 for beta-1.60-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FGuoHao150%2Fupgma" "/workspace/builds/worker-25/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-25/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/GuoHao150/upgma on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/GuoHao150/upgma [INFO] finished tweaking git repo https://github.com/GuoHao150/upgma [INFO] tweaked toml for git repo https://github.com/GuoHao150/upgma written to /workspace/builds/worker-25/source/Cargo.toml [INFO] crate git repo https://github.com/GuoHao150/upgma already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-25/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-25/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f7768d7ec883eef6255108dbf1bec2a35ca53406b5737e7040ef1064a1c4def3 [INFO] running `Command { std: "docker" "start" "-a" "f7768d7ec883eef6255108dbf1bec2a35ca53406b5737e7040ef1064a1c4def3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f7768d7ec883eef6255108dbf1bec2a35ca53406b5737e7040ef1064a1c4def3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f7768d7ec883eef6255108dbf1bec2a35ca53406b5737e7040ef1064a1c4def3", kill_on_drop: false }` [INFO] [stdout] f7768d7ec883eef6255108dbf1bec2a35ca53406b5737e7040ef1064a1c4def3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-25/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-25/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 304fa92f914fc0e68f357e2a053133b253411e6e38955a967c085b814e61bdd2 [INFO] running `Command { std: "docker" "start" "-a" "304fa92f914fc0e68f357e2a053133b253411e6e38955a967c085b814e61bdd2", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling libc v0.2.112 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling ABtree v0.8.0 [INFO] [stderr] Compiling memoffset v0.6.5 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling num_cpus v1.13.1 [INFO] [stderr] Compiling upgma v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::env` [INFO] [stdout] --> src/main.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std::env; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `OpenOptions` [INFO] [stdout] --> src/main.rs:2:21 [INFO] [stdout] | [INFO] [stdout] 2 | use std::fs::{File, OpenOptions}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `RwLock` [INFO] [stdout] --> src/main.rs:5:22 [INFO] [stdout] | [INFO] [stdout] 5 | use std::sync::{Arc, RwLock}; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `super::super::MaxHeap::MaxHeap::MaxHeap as Maxheap` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use super::super::MaxHeap::MaxHeap::MaxHeap as Maxheap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude::*` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BTreeSet`, `HashMap`, `HashSet`, `VecDeque` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:3:24 [INFO] [stdout] | [INFO] [stdout] 3 | use std::collections::{BTreeSet, HashMap, HashSet, VecDeque}; [INFO] [stdout] | ^^^^^^^^ ^^^^^^^ ^^^^^^^ ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Hash`, `Hasher` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:4:17 [INFO] [stdout] | [INFO] [stdout] 4 | use std::hash::{Hash, Hasher}; [INFO] [stdout] | ^^^^ ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::iter::FromIterator` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use std::iter::FromIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Arc`, `RwLock` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:6:17 [INFO] [stdout] | [INFO] [stdout] 6 | use std::sync::{Arc, RwLock}; [INFO] [stdout] | ^^^ ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ABtree::BTree` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use ABtree::BTree; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `k` [INFO] [stdout] --> src/main.rs:78:16 [INFO] [stdout] | [INFO] [stdout] 78 | .map(|(k, v)| v.len()) [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_k` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/BinaryTree/BinaryTreeEmb.rs:69:13 [INFO] [stdout] | [INFO] [stdout] 69 | let mut b = VecDeque::new(); [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: cannot borrow `*self` as mutable because it is also borrowed as immutable [INFO] [stdout] --> src/BinaryTree/BinaryTreeEmb.rs:255:32 [INFO] [stdout] | [INFO] [stdout] 243 | let right_node = self.index_node_dict.get(&right); [INFO] [stdout] | -------------------------------- immutable borrow occurs here [INFO] [stdout] ... [INFO] [stdout] 255 | let new_centroid_idx = self.merge(Node::clone(left_node), Node::clone(right_node)); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^----------^^ [INFO] [stdout] | | | [INFO] [stdout] | | immutable borrow later used here [INFO] [stdout] | mutable borrow occurs here [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mutable_borrow_reservation_conflict)]` on by default [INFO] [stdout] = warning: this borrowing pattern was not meant to be accepted, and may become a hard error in the future [INFO] [stdout] = note: for more information, see issue #59159 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct is never constructed: `BinaryT2` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:9:12 [INFO] [stdout] | [INFO] [stdout] 9 | pub struct BinaryT2 { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `RcStr` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:16:1 [INFO] [stdout] | [INFO] [stdout] 16 | pub(crate) type RcStr = Arc; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `InnerData` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:18:1 [INFO] [stdout] | [INFO] [stdout] 18 | type InnerData = Option>>>; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `RcNode` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:20:1 [INFO] [stdout] | [INFO] [stdout] 20 | pub(crate) type RcNode = Option>>; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `PlaceHolderType` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:21:1 [INFO] [stdout] | [INFO] [stdout] 21 | pub(crate) type PlaceHolderType = Option; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct is never constructed: `PlaceHolder` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:23:19 [INFO] [stdout] | [INFO] [stdout] 23 | pub(crate) struct PlaceHolder; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct is never constructed: `Node` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:25:19 [INFO] [stdout] | [INFO] [stdout] 25 | pub(crate) struct Node { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new_from_str` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:34:19 [INFO] [stdout] | [INFO] [stdout] 34 | pub(crate) fn new_from_str(i: RcStr) -> Self { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new_empty` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:44:19 [INFO] [stdout] | [INFO] [stdout] 44 | pub(crate) fn new_empty() -> Self { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `set_centroids` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:55:8 [INFO] [stdout] | [INFO] [stdout] 55 | fn set_centroids(&mut self, flag: bool) { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `set_parent` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:60:8 [INFO] [stdout] | [INFO] [stdout] 60 | fn set_parent(&mut self, parent: RcNode) { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `get_parent` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:65:8 [INFO] [stdout] | [INFO] [stdout] 65 | fn get_parent(node: &RcNode) -> RcNode { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `get_left` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:70:8 [INFO] [stdout] | [INFO] [stdout] 70 | fn get_left(node: &RcNode) -> RcNode { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `get_right` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:75:8 [INFO] [stdout] | [INFO] [stdout] 75 | fn get_right(node: &RcNode) -> RcNode { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:82:19 [INFO] [stdout] | [INFO] [stdout] 82 | pub(crate) fn new(threads: usize) -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `insert` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:91:8 [INFO] [stdout] | [INFO] [stdout] 91 | fn insert(&mut self, f: RcNode, t: RcNode) -> RcNode { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `get_inner_data` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:148:8 [INFO] [stdout] | [INFO] [stdout] 148 | fn get_inner_data(&self, node: &RcNode) -> InnerData { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `inner_data_size` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:159:8 [INFO] [stdout] | [INFO] [stdout] 159 | fn inner_data_size(&self, node: &RcNode) -> usize { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `get_leaf_centroids` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:171:8 [INFO] [stdout] | [INFO] [stdout] 171 | fn get_leaf_centroids(&self, all_samples: &mut BTree) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `update_heap` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:186:19 [INFO] [stdout] | [INFO] [stdout] 186 | pub(crate) fn update_heap( [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `calculate_avg_parallel` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:222:8 [INFO] [stdout] | [INFO] [stdout] 222 | fn calculate_avg_parallel( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `calculate_avg` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:237:8 [INFO] [stdout] | [INFO] [stdout] 237 | fn calculate_avg( [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `calculate_avg2` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:284:8 [INFO] [stdout] | [INFO] [stdout] 284 | fn calculate_avg2( [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `to_newick` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:340:19 [INFO] [stdout] | [INFO] [stdout] 340 | pub(crate) fn to_newick(&self) -> String { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `PlaceHolderType` [INFO] [stdout] --> src/BinaryTree/BinaryTreeEmb.rs:11:1 [INFO] [stdout] | [INFO] [stdout] 11 | type PlaceHolderType = Option; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `read_file_itertor` [INFO] [stdout] --> src/main.rs:16:4 [INFO] [stdout] | [INFO] [stdout] 16 | fn read_file_itertor(path: &str) -> io::Result>> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `write_file` [INFO] [stdout] --> src/main.rs:23:4 [INFO] [stdout] | [INFO] [stdout] 23 | fn write_file(path: &str, content: &str) -> io::Result<()> { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `BinaryTree` should have a snake case name [INFO] [stdout] --> src/main.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | mod BinaryTree; [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `binary_tree` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `MaxHeap` should have a snake case name [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | mod MaxHeap; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `max_heap` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:195:5 [INFO] [stdout] | [INFO] [stdout] 195 | clustering(); [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `BinaryTree2` should have a snake case name [INFO] [stdout] --> src/BinaryTree/mod.rs:1:9 [INFO] [stdout] | [INFO] [stdout] 1 | pub mod BinaryTree2; [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `binary_tree2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `BinaryTreeEmb` should have a snake case name [INFO] [stdout] --> src/BinaryTree/mod.rs:2:9 [INFO] [stdout] | [INFO] [stdout] 2 | pub mod BinaryTreeEmb; [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `binary_tree_emb` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `BinaryTreeST` should have a snake case name [INFO] [stdout] --> src/BinaryTree/mod.rs:3:9 [INFO] [stdout] | [INFO] [stdout] 3 | pub mod BinaryTreeST; [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `binary_tree_st` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `MaxHeap` should have a snake case name [INFO] [stdout] --> src/MaxHeap/mod.rs:1:9 [INFO] [stdout] | [INFO] [stdout] 1 | pub mod MaxHeap; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `max_heap` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 47 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 38.89s [INFO] running `Command { std: "docker" "inspect" "304fa92f914fc0e68f357e2a053133b253411e6e38955a967c085b814e61bdd2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "304fa92f914fc0e68f357e2a053133b253411e6e38955a967c085b814e61bdd2", kill_on_drop: false }` [INFO] [stdout] 304fa92f914fc0e68f357e2a053133b253411e6e38955a967c085b814e61bdd2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-25/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-25/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 41de25ebd915a56e7b63eff60c29eb56b957af4b47fbcbf00704679db5f7b0ce [INFO] running `Command { std: "docker" "start" "-a" "41de25ebd915a56e7b63eff60c29eb56b957af4b47fbcbf00704679db5f7b0ce", kill_on_drop: false }` [INFO] [stderr] Compiling upgma v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::env` [INFO] [stdout] --> src/main.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std::env; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `OpenOptions` [INFO] [stdout] --> src/main.rs:2:21 [INFO] [stdout] | [INFO] [stdout] 2 | use std::fs::{File, OpenOptions}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `RwLock` [INFO] [stdout] --> src/main.rs:5:22 [INFO] [stdout] | [INFO] [stdout] 5 | use std::sync::{Arc, RwLock}; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `super::super::MaxHeap::MaxHeap::MaxHeap as Maxheap` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use super::super::MaxHeap::MaxHeap::MaxHeap as Maxheap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude::*` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BTreeSet`, `HashMap`, `HashSet`, `VecDeque` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:3:24 [INFO] [stdout] | [INFO] [stdout] 3 | use std::collections::{BTreeSet, HashMap, HashSet, VecDeque}; [INFO] [stdout] | ^^^^^^^^ ^^^^^^^ ^^^^^^^ ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Hash`, `Hasher` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:4:17 [INFO] [stdout] | [INFO] [stdout] 4 | use std::hash::{Hash, Hasher}; [INFO] [stdout] | ^^^^ ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::iter::FromIterator` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use std::iter::FromIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Arc`, `RwLock` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:6:17 [INFO] [stdout] | [INFO] [stdout] 6 | use std::sync::{Arc, RwLock}; [INFO] [stdout] | ^^^ ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ABtree::BTree` [INFO] [stdout] --> src/BinaryTree/BinaryTreeST.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use ABtree::BTree; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `k` [INFO] [stdout] --> src/main.rs:78:16 [INFO] [stdout] | [INFO] [stdout] 78 | .map(|(k, v)| v.len()) [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_k` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/BinaryTree/BinaryTreeEmb.rs:69:13 [INFO] [stdout] | [INFO] [stdout] 69 | let mut b = VecDeque::new(); [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: cannot borrow `*self` as mutable because it is also borrowed as immutable [INFO] [stdout] --> src/BinaryTree/BinaryTreeEmb.rs:255:32 [INFO] [stdout] | [INFO] [stdout] 243 | let right_node = self.index_node_dict.get(&right); [INFO] [stdout] | -------------------------------- immutable borrow occurs here [INFO] [stdout] ... [INFO] [stdout] 255 | let new_centroid_idx = self.merge(Node::clone(left_node), Node::clone(right_node)); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^----------^^ [INFO] [stdout] | | | [INFO] [stdout] | | immutable borrow later used here [INFO] [stdout] | mutable borrow occurs here [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mutable_borrow_reservation_conflict)]` on by default [INFO] [stdout] = warning: this borrowing pattern was not meant to be accepted, and may become a hard error in the future [INFO] [stdout] = note: for more information, see issue #59159 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct is never constructed: `BinaryT2` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:9:12 [INFO] [stdout] | [INFO] [stdout] 9 | pub struct BinaryT2 { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `RcStr` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:16:1 [INFO] [stdout] | [INFO] [stdout] 16 | pub(crate) type RcStr = Arc; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `InnerData` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:18:1 [INFO] [stdout] | [INFO] [stdout] 18 | type InnerData = Option>>>; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `RcNode` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:20:1 [INFO] [stdout] | [INFO] [stdout] 20 | pub(crate) type RcNode = Option>>; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `PlaceHolderType` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:21:1 [INFO] [stdout] | [INFO] [stdout] 21 | pub(crate) type PlaceHolderType = Option; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct is never constructed: `PlaceHolder` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:23:19 [INFO] [stdout] | [INFO] [stdout] 23 | pub(crate) struct PlaceHolder; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct is never constructed: `Node` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:25:19 [INFO] [stdout] | [INFO] [stdout] 25 | pub(crate) struct Node { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new_from_str` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:34:19 [INFO] [stdout] | [INFO] [stdout] 34 | pub(crate) fn new_from_str(i: RcStr) -> Self { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new_empty` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:44:19 [INFO] [stdout] | [INFO] [stdout] 44 | pub(crate) fn new_empty() -> Self { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `set_centroids` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:55:8 [INFO] [stdout] | [INFO] [stdout] 55 | fn set_centroids(&mut self, flag: bool) { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `set_parent` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:60:8 [INFO] [stdout] | [INFO] [stdout] 60 | fn set_parent(&mut self, parent: RcNode) { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `get_parent` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:65:8 [INFO] [stdout] | [INFO] [stdout] 65 | fn get_parent(node: &RcNode) -> RcNode { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `get_left` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:70:8 [INFO] [stdout] | [INFO] [stdout] 70 | fn get_left(node: &RcNode) -> RcNode { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `get_right` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:75:8 [INFO] [stdout] | [INFO] [stdout] 75 | fn get_right(node: &RcNode) -> RcNode { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:82:19 [INFO] [stdout] | [INFO] [stdout] 82 | pub(crate) fn new(threads: usize) -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `insert` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:91:8 [INFO] [stdout] | [INFO] [stdout] 91 | fn insert(&mut self, f: RcNode, t: RcNode) -> RcNode { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `get_inner_data` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:148:8 [INFO] [stdout] | [INFO] [stdout] 148 | fn get_inner_data(&self, node: &RcNode) -> InnerData { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `inner_data_size` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:159:8 [INFO] [stdout] | [INFO] [stdout] 159 | fn inner_data_size(&self, node: &RcNode) -> usize { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `get_leaf_centroids` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:171:8 [INFO] [stdout] | [INFO] [stdout] 171 | fn get_leaf_centroids(&self, all_samples: &mut BTree) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `update_heap` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:186:19 [INFO] [stdout] | [INFO] [stdout] 186 | pub(crate) fn update_heap( [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `calculate_avg_parallel` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:222:8 [INFO] [stdout] | [INFO] [stdout] 222 | fn calculate_avg_parallel( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `calculate_avg` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:237:8 [INFO] [stdout] | [INFO] [stdout] 237 | fn calculate_avg( [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `calculate_avg2` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:284:8 [INFO] [stdout] | [INFO] [stdout] 284 | fn calculate_avg2( [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `to_newick` [INFO] [stdout] --> src/BinaryTree/BinaryTree2.rs:340:19 [INFO] [stdout] | [INFO] [stdout] 340 | pub(crate) fn to_newick(&self) -> String { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `PlaceHolderType` [INFO] [stdout] --> src/BinaryTree/BinaryTreeEmb.rs:11:1 [INFO] [stdout] | [INFO] [stdout] 11 | type PlaceHolderType = Option; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `read_file_itertor` [INFO] [stdout] --> src/main.rs:16:4 [INFO] [stdout] | [INFO] [stdout] 16 | fn read_file_itertor(path: &str) -> io::Result>> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `write_file` [INFO] [stdout] --> src/main.rs:23:4 [INFO] [stdout] | [INFO] [stdout] 23 | fn write_file(path: &str, content: &str) -> io::Result<()> { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `BinaryTree` should have a snake case name [INFO] [stdout] --> src/main.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | mod BinaryTree; [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `binary_tree` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `MaxHeap` should have a snake case name [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | mod MaxHeap; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `max_heap` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:195:5 [INFO] [stdout] | [INFO] [stdout] 195 | clustering(); [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `BinaryTree2` should have a snake case name [INFO] [stdout] --> src/BinaryTree/mod.rs:1:9 [INFO] [stdout] | [INFO] [stdout] 1 | pub mod BinaryTree2; [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `binary_tree2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `BinaryTreeEmb` should have a snake case name [INFO] [stdout] --> src/BinaryTree/mod.rs:2:9 [INFO] [stdout] | [INFO] [stdout] 2 | pub mod BinaryTreeEmb; [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `binary_tree_emb` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `BinaryTreeST` should have a snake case name [INFO] [stdout] --> src/BinaryTree/mod.rs:3:9 [INFO] [stdout] | [INFO] [stdout] 3 | pub mod BinaryTreeST; [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `binary_tree_st` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `MaxHeap` should have a snake case name [INFO] [stdout] --> src/MaxHeap/mod.rs:1:9 [INFO] [stdout] | [INFO] [stdout] 1 | pub mod MaxHeap; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `max_heap` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 47 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.73s [INFO] running `Command { std: "docker" "inspect" "41de25ebd915a56e7b63eff60c29eb56b957af4b47fbcbf00704679db5f7b0ce", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "41de25ebd915a56e7b63eff60c29eb56b957af4b47fbcbf00704679db5f7b0ce", kill_on_drop: false }` [INFO] [stdout] 41de25ebd915a56e7b63eff60c29eb56b957af4b47fbcbf00704679db5f7b0ce [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-25/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-25/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 5a1d60db959d2444ab40166f79c646b4a6e39a117f2667bc9d5c17eb1784ef23 [INFO] running `Command { std: "docker" "start" "-a" "5a1d60db959d2444ab40166f79c646b4a6e39a117f2667bc9d5c17eb1784ef23", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] warning: unused import: `std::env` [INFO] [stderr] --> src/main.rs:1:5 [INFO] [stderr] | [INFO] [stderr] 1 | use std::env; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `OpenOptions` [INFO] [stderr] --> src/main.rs:2:21 [INFO] [stderr] | [INFO] [stderr] 2 | use std::fs::{File, OpenOptions}; [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `RwLock` [INFO] [stderr] --> src/main.rs:5:22 [INFO] [stderr] | [INFO] [stderr] 5 | use std::sync::{Arc, RwLock}; [INFO] [stderr] | ^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `super::super::MaxHeap::MaxHeap::MaxHeap as Maxheap` [INFO] [stderr] --> src/BinaryTree/BinaryTreeST.rs:1:5 [INFO] [stderr] | [INFO] [stderr] 1 | use super::super::MaxHeap::MaxHeap::MaxHeap as Maxheap; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `rayon::prelude::*` [INFO] [stderr] --> src/BinaryTree/BinaryTreeST.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use rayon::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `BTreeSet`, `HashMap`, `HashSet`, `VecDeque` [INFO] [stderr] --> src/BinaryTree/BinaryTreeST.rs:3:24 [INFO] [stderr] | [INFO] [stderr] 3 | use std::collections::{BTreeSet, HashMap, HashSet, VecDeque}; [INFO] [stderr] | ^^^^^^^^ ^^^^^^^ ^^^^^^^ ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `Hash`, `Hasher` [INFO] [stderr] --> src/BinaryTree/BinaryTreeST.rs:4:17 [INFO] [stderr] | [INFO] [stderr] 4 | use std::hash::{Hash, Hasher}; [INFO] [stderr] | ^^^^ ^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::iter::FromIterator` [INFO] [stderr] --> src/BinaryTree/BinaryTreeST.rs:5:5 [INFO] [stderr] | [INFO] [stderr] 5 | use std::iter::FromIterator; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `Arc`, `RwLock` [INFO] [stderr] --> src/BinaryTree/BinaryTreeST.rs:6:17 [INFO] [stderr] | [INFO] [stderr] 6 | use std::sync::{Arc, RwLock}; [INFO] [stderr] | ^^^ ^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ABtree::BTree` [INFO] [stderr] --> src/BinaryTree/BinaryTreeST.rs:7:5 [INFO] [stderr] | [INFO] [stderr] 7 | use ABtree::BTree; [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `k` [INFO] [stderr] --> src/main.rs:78:16 [INFO] [stderr] | [INFO] [stderr] 78 | .map(|(k, v)| v.len()) [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_k` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/BinaryTree/BinaryTreeEmb.rs:69:13 [INFO] [stderr] | [INFO] [stderr] 69 | let mut b = VecDeque::new(); [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: cannot borrow `*self` as mutable because it is also borrowed as immutable [INFO] [stderr] --> src/BinaryTree/BinaryTreeEmb.rs:255:32 [INFO] [stderr] | [INFO] [stderr] 243 | let right_node = self.index_node_dict.get(&right); [INFO] [stderr] | -------------------------------- immutable borrow occurs here [INFO] [stderr] ... [INFO] [stderr] 255 | let new_centroid_idx = self.merge(Node::clone(left_node), Node::clone(right_node)); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^----------^^ [INFO] [stderr] | | | [INFO] [stderr] | | immutable borrow later used here [INFO] [stderr] | mutable borrow occurs here [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(mutable_borrow_reservation_conflict)]` on by default [INFO] [stderr] = warning: this borrowing pattern was not meant to be accepted, and may become a hard error in the future [INFO] [stderr] = note: for more information, see issue #59159 [INFO] [stderr] [INFO] [stderr] warning: struct is never constructed: `BinaryT2` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:9:12 [INFO] [stderr] | [INFO] [stderr] 9 | pub struct BinaryT2 { [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: type alias is never used: `RcStr` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:16:1 [INFO] [stderr] | [INFO] [stderr] 16 | pub(crate) type RcStr = Arc; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: type alias is never used: `InnerData` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:18:1 [INFO] [stderr] | [INFO] [stderr] 18 | type InnerData = Option>>>; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: type alias is never used: `RcNode` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:20:1 [INFO] [stderr] | [INFO] [stderr] 20 | pub(crate) type RcNode = Option>>; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: type alias is never used: `PlaceHolderType` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:21:1 [INFO] [stderr] | [INFO] [stderr] 21 | pub(crate) type PlaceHolderType = Option; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: struct is never constructed: `PlaceHolder` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:23:19 [INFO] [stderr] | [INFO] [stderr] 23 | pub(crate) struct PlaceHolder; [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: struct is never constructed: `Node` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:25:19 [INFO] [stderr] | [INFO] [stderr] 25 | pub(crate) struct Node { [INFO] [stderr] | ^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `new_from_str` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:34:19 [INFO] [stderr] | [INFO] [stderr] 34 | pub(crate) fn new_from_str(i: RcStr) -> Self { [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `new_empty` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:44:19 [INFO] [stderr] | [INFO] [stderr] 44 | pub(crate) fn new_empty() -> Self { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `set_centroids` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:55:8 [INFO] [stderr] | [INFO] [stderr] 55 | fn set_centroids(&mut self, flag: bool) { [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `set_parent` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:60:8 [INFO] [stderr] | [INFO] [stderr] 60 | fn set_parent(&mut self, parent: RcNode) { [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `get_parent` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:65:8 [INFO] [stderr] | [INFO] [stderr] 65 | fn get_parent(node: &RcNode) -> RcNode { [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `get_left` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:70:8 [INFO] [stderr] | [INFO] [stderr] 70 | fn get_left(node: &RcNode) -> RcNode { [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `get_right` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:75:8 [INFO] [stderr] | [INFO] [stderr] 75 | fn get_right(node: &RcNode) -> RcNode { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `new` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:82:19 [INFO] [stderr] | [INFO] [stderr] 82 | pub(crate) fn new(threads: usize) -> Self { [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `insert` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:91:8 [INFO] [stderr] | [INFO] [stderr] 91 | fn insert(&mut self, f: RcNode, t: RcNode) -> RcNode { [INFO] [stderr] | ^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `get_inner_data` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:148:8 [INFO] [stderr] | [INFO] [stderr] 148 | fn get_inner_data(&self, node: &RcNode) -> InnerData { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `inner_data_size` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:159:8 [INFO] [stderr] | [INFO] [stderr] 159 | fn inner_data_size(&self, node: &RcNode) -> usize { [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `get_leaf_centroids` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:171:8 [INFO] [stderr] | [INFO] [stderr] 171 | fn get_leaf_centroids(&self, all_samples: &mut BTree) -> Vec { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `update_heap` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:186:19 [INFO] [stderr] | [INFO] [stderr] 186 | pub(crate) fn update_heap( [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `calculate_avg_parallel` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:222:8 [INFO] [stderr] | [INFO] [stderr] 222 | fn calculate_avg_parallel( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `calculate_avg` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:237:8 [INFO] [stderr] | [INFO] [stderr] 237 | fn calculate_avg( [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `calculate_avg2` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:284:8 [INFO] [stderr] | [INFO] [stderr] 284 | fn calculate_avg2( [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `to_newick` [INFO] [stderr] --> src/BinaryTree/BinaryTree2.rs:340:19 [INFO] [stderr] | [INFO] [stderr] 340 | pub(crate) fn to_newick(&self) -> String { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: type alias is never used: `PlaceHolderType` [INFO] [stderr] --> src/BinaryTree/BinaryTreeEmb.rs:11:1 [INFO] [stderr] | [INFO] [stderr] 11 | type PlaceHolderType = Option; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `read_file_itertor` [INFO] [stderr] --> src/main.rs:16:4 [INFO] [stderr] | [INFO] [stderr] 16 | fn read_file_itertor(path: &str) -> io::Result>> { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `write_file` [INFO] [stderr] --> src/main.rs:23:4 [INFO] [stderr] | [INFO] [stderr] 23 | fn write_file(path: &str, content: &str) -> io::Result<()> { [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: module `BinaryTree` should have a snake case name [INFO] [stderr] --> src/main.rs:7:5 [INFO] [stderr] | [INFO] [stderr] 7 | mod BinaryTree; [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `binary_tree` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: module `MaxHeap` should have a snake case name [INFO] [stderr] --> src/main.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | mod MaxHeap; [INFO] [stderr] | ^^^^^^^ help: convert the identifier to snake case: `max_heap` [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:195:5 [INFO] [stderr] | [INFO] [stderr] 195 | clustering(); [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: module `BinaryTree2` should have a snake case name [INFO] [stderr] --> src/BinaryTree/mod.rs:1:9 [INFO] [stderr] | [INFO] [stderr] 1 | pub mod BinaryTree2; [INFO] [stderr] | ^^^^^^^^^^^ help: convert the identifier to snake case: `binary_tree2` [INFO] [stderr] [INFO] [stderr] warning: module `BinaryTreeEmb` should have a snake case name [INFO] [stderr] --> src/BinaryTree/mod.rs:2:9 [INFO] [stderr] | [INFO] [stderr] 2 | pub mod BinaryTreeEmb; [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `binary_tree_emb` [INFO] [stderr] [INFO] [stderr] warning: module `BinaryTreeST` should have a snake case name [INFO] [stderr] --> src/BinaryTree/mod.rs:3:9 [INFO] [stderr] | [INFO] [stderr] 3 | pub mod BinaryTreeST; [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `binary_tree_st` [INFO] [stderr] [INFO] [stderr] warning: module `MaxHeap` should have a snake case name [INFO] [stderr] --> src/MaxHeap/mod.rs:1:9 [INFO] [stderr] | [INFO] [stderr] 1 | pub mod MaxHeap; [INFO] [stderr] | ^^^^^^^ help: convert the identifier to snake case: `max_heap` [INFO] [stderr] [INFO] [stderr] warning: `upgma` (bin "upgma" test) generated 47 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/upgma-a117c6b5f79cc38f) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "5a1d60db959d2444ab40166f79c646b4a6e39a117f2667bc9d5c17eb1784ef23", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5a1d60db959d2444ab40166f79c646b4a6e39a117f2667bc9d5c17eb1784ef23", kill_on_drop: false }` [INFO] [stdout] 5a1d60db959d2444ab40166f79c646b4a6e39a117f2667bc9d5c17eb1784ef23