[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ae36c59429e1ac7bc38bf4a4e6f3f2942bf58526 [INFO] testing 38/pyd4 against 1.59.0 for beta-1.60-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-0/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1500d80338018d39d133a468920f4fe9ad98d5e5be9f769b001aae309d9dec1f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1500d80338018d39d133a468920f4fe9ad98d5e5be9f769b001aae309d9dec1f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1500d80338018d39d133a468920f4fe9ad98d5e5be9f769b001aae309d9dec1f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1500d80338018d39d133a468920f4fe9ad98d5e5be9f769b001aae309d9dec1f", kill_on_drop: false }` [INFO] [stdout] 1500d80338018d39d133a468920f4fe9ad98d5e5be9f769b001aae309d9dec1f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 64835f97b76efc5ac204ba28e304c8bc68bb5c5a67aaf95c5dc86c72759218ba [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "64835f97b76efc5ac204ba28e304c8bc68bb5c5a67aaf95c5dc86c72759218ba", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling serde v1.0.127 [INFO] [stderr] Compiling unindent v0.1.7 [INFO] [stderr] Compiling inventory v0.1.10 [INFO] [stderr] Compiling pyo3 v0.12.4 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling parking_lot_core v0.8.3 [INFO] [stderr] Compiling memmap v0.7.0 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling parking_lot v0.11.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling d4-framefile v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] Compiling serde_json v1.0.66 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.4 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling ctor v0.1.20 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling serde_derive v1.0.127 [INFO] [stderr] Compiling pyo3cls v0.12.4 [INFO] [stderr] Compiling indoc v0.3.6 [INFO] [stderr] Compiling d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-02b67d121cb45aca/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-0c86d91bdffeb2cd/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-0c86d91bdffeb2cd/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x557ba3cff27c - std::backtrace_rs::backtrace::libunwind::trace::h91c465e73bf6c785 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x557ba3cff27c - std::backtrace_rs::backtrace::trace_unsynchronized::hae9da36f5d58b5f3 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x557ba3cff27c - std::sys_common::backtrace::_print_fmt::h7f499fa126a7effb [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x557ba3cff27c - ::fmt::h3e2b509ce2ce6007 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x557ba3d272ec - core::fmt::write::h753c7571fa063ecb [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/fmt/mod.rs:1168:17 [INFO] [stderr] 5: 0x557ba3cfa453 - std::io::Write::write_fmt::h2815c0519c99ba09 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/io/mod.rs:1660:15 [INFO] [stderr] 6: 0x557ba3d01c62 - std::sys_common::backtrace::_print::h64941a6fc8b0ed9b [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x557ba3d01c62 - std::sys_common::backtrace::print::hcf25e43e1a9b0766 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x557ba3d01c62 - std::panicking::default_hook::{{closure}}::h78d3e6cf97fc623d [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:211:50 [INFO] [stderr] 9: 0x557ba3d01845 - std::panicking::default_hook::hda898f8d3ad1a5ae [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:228:9 [INFO] [stderr] 10: 0x557ba3d022b3 - std::panicking::rust_panic_with_hook::h1a5ea2d6c23051aa [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:606:17 [INFO] [stderr] 11: 0x557ba3d01fa2 - std::panicking::begin_panic_handler::{{closure}}::h07f549390938b73f [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:500:13 [INFO] [stderr] 12: 0x557ba3cff724 - std::sys_common::backtrace::__rust_end_short_backtrace::h5ec3758a92cfb00d [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stderr] 13: 0x557ba3d01d09 - rust_begin_unwind [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:498:5 [INFO] [stderr] 14: 0x557ba37bbae1 - core::panicking::panic_fmt::h3a79a6a99affe1d5 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panicking.rs:116:14 [INFO] [stderr] 15: 0x557ba37bba2d - core::panicking::panic::h97167cd315d19cd4 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panicking.rs:48:5 [INFO] [stderr] 16: 0x557ba37bcb7b - build_script_build::build_own_htslib::h72e613aabccc0dcc [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5 [INFO] [stderr] 17: 0x557ba37bcfd4 - build_script_build::main::h495fcadbe793d511 [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:66:9 [INFO] [stderr] 18: 0x557ba37be08b - core::ops::function::FnOnce::call_once::hd4e323e7cabbcd7b [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x557ba37bdc5e - std::sys_common::backtrace::__rust_begin_short_backtrace::h19c74bb2c9b42188 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stderr] 20: 0x557ba37be6a1 - std::rt::lang_start::{{closure}}::he87f0fc2cfbf98e4 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/rt.rs:145:18 [INFO] [stderr] 21: 0x557ba3cfe930 - core::ops::function::impls:: for &F>::call_once::h443f738a8e9f947a [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x557ba3cfe930 - std::panicking::try::do_call::h1e21ba261ba489ec [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:406:40 [INFO] [stderr] 23: 0x557ba3cfe930 - std::panicking::try::h6afd48af8b6c96ac [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:370:19 [INFO] [stderr] 24: 0x557ba3cfe930 - std::panic::catch_unwind::h85dd95e0bab7fb60 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panic.rs:133:14 [INFO] [stderr] 25: 0x557ba3cfe930 - std::rt::lang_start_internal::{{closure}}::h038455e697c8b03e [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/rt.rs:128:48 [INFO] [stderr] 26: 0x557ba3cfe930 - std::panicking::try::do_call::h6b0ad65979f3077a [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:406:40 [INFO] [stderr] 27: 0x557ba3cfe930 - std::panicking::try::h010108d314169ac6 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:370:19 [INFO] [stderr] 28: 0x557ba3cfe930 - std::panic::catch_unwind::hff397f912b1535c2 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panic.rs:133:14 [INFO] [stderr] 29: 0x557ba3cfe930 - std::rt::lang_start_internal::h52e73755f77c7dd9 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/rt.rs:128:20 [INFO] [stderr] 30: 0x557ba37be670 - std::rt::lang_start::hf33a60bcce872a0d [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/rt.rs:144:17 [INFO] [stderr] 31: 0x557ba37bd64c - main [INFO] [stderr] 32: 0x7faad80350b3 - __libc_start_main [INFO] [stderr] 33: 0x557ba37bc27e - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "64835f97b76efc5ac204ba28e304c8bc68bb5c5a67aaf95c5dc86c72759218ba", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "64835f97b76efc5ac204ba28e304c8bc68bb5c5a67aaf95c5dc86c72759218ba", kill_on_drop: false }` [INFO] [stdout] 64835f97b76efc5ac204ba28e304c8bc68bb5c5a67aaf95c5dc86c72759218ba