[INFO] cloning repository https://github.com/10XGenomics/bamtofastq
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/bamtofastq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 98f99e6103d02c5945d7c984f8cc9d51c2464148
[INFO] testing 10XGenomics/bamtofastq against 1.59.0 for beta-1.60-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq" "/workspace/builds/worker-22/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-22/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/bamtofastq on toolchain 1.59.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-22/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] finished tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] tweaked toml for git repo https://github.com/10XGenomics/bamtofastq written to /workspace/builds/worker-22/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/bamtofastq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded lz4-sys v1.9.2
[INFO] [stderr]   Downloaded lz4 v1.23.2
[INFO] [stderr]   Downloaded openssl-sys v0.9.72
[INFO] [stderr]   Downloaded cmake v0.1.48
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded docopt v1.1.1
[INFO] [stderr]   Downloaded rust-htslib v0.38.2
[INFO] [stderr]   Downloaded bio-types v0.12.1
[INFO] [stderr]   Downloaded min-max-heap v1.3.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded libdeflate-sys v0.5.0
[INFO] [stderr]   Downloaded shardio v0.8.2
[INFO] [stderr]   Downloaded lzma-sys v0.1.17
[INFO] [stderr]   Downloaded curl-sys v0.4.52+curl-7.81.0
[INFO] [stderr]   Downloaded hts-sys v2.0.2
[INFO] [stderr]   Downloaded openssl-src v111.17.0+1.1.1m
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-22/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-22/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ed14e240b0a19192170b479ad66cd769c781d6142f24a990073658cd94545be7
[INFO] running `Command { std: "docker" "start" "-a" "ed14e240b0a19192170b479ad66cd769c781d6142f24a990073658cd94545be7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ed14e240b0a19192170b479ad66cd769c781d6142f24a990073658cd94545be7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ed14e240b0a19192170b479ad66cd769c781d6142f24a990073658cd94545be7", kill_on_drop: false }`
[INFO] [stdout] ed14e240b0a19192170b479ad66cd769c781d6142f24a990073658cd94545be7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-22/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-22/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 02b19b7655bb4ef95b3253efce38c828d5626b4e2a24c699c6ce18d5e300e9c0
[INFO] running `Command { std: "docker" "start" "-a" "02b19b7655bb4ef95b3253efce38c828d5626b4e2a24c699c6ce18d5e300e9c0", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling tinyvec_macros v0.1.0
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.6
[INFO] [stderr]    Compiling matches v0.1.9
[INFO] [stderr]    Compiling gimli v0.26.1
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling crc32fast v1.3.1
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling rustc-demangle v0.1.21
[INFO] [stderr]    Compiling anyhow v1.0.53
[INFO] [stderr]    Compiling unicode-bidi v0.3.7
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling ryu v1.0.9
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling min-max-heap v1.3.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling fastrand v1.7.0
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling libc v0.2.117
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling serde v1.0.136
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]    Compiling tinyvec v1.5.1
[INFO] [stderr]    Compiling form_urlencoded v1.0.1
[INFO] [stderr]    Compiling itertools v0.10.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling cc v1.0.72
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling unicode-normalization v0.1.19
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling object v0.27.1
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling crossbeam-channel v0.5.2
[INFO] [stderr]    Compiling cmake v0.1.48
[INFO] [stderr]    Compiling tempfile v3.3.0
[INFO] [stderr]    Compiling idna v0.2.3
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling libdeflate-sys v0.5.0
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling backtrace v0.3.64
[INFO] [stderr]    Compiling lz4-sys v1.9.2
[INFO] [stderr]    Compiling hts-sys v2.0.2
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling url v2.2.2
[INFO] [stderr]    Compiling addr2line v0.17.0
[INFO] [stderr]    Compiling serde_derive v1.0.136
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling bio-types v0.12.1
[INFO] [stderr]    Compiling lz4 v1.23.2
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling serde_bytes v0.11.5
[INFO] [stderr]    Compiling docopt v1.1.1
[INFO] [stderr]    Compiling shardio v0.8.2
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling rust-htslib v0.38.2
[INFO] [stderr]    Compiling bamtofastq v1.4.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [optimized + debuginfo] target(s) in 39.63s
[INFO] running `Command { std: "docker" "inspect" "02b19b7655bb4ef95b3253efce38c828d5626b4e2a24c699c6ce18d5e300e9c0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "02b19b7655bb4ef95b3253efce38c828d5626b4e2a24c699c6ce18d5e300e9c0", kill_on_drop: false }`
[INFO] [stdout] 02b19b7655bb4ef95b3253efce38c828d5626b4e2a24c699c6ce18d5e300e9c0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-22/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-22/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 02debf0a92f992486407f7fe2593ffe79c34fa2b1b73736dc16340c6368367b3
[INFO] running `Command { std: "docker" "start" "-a" "02debf0a92f992486407f7fe2593ffe79c34fa2b1b73736dc16340c6368367b3", kill_on_drop: false }`
[INFO] [stderr]    Compiling bamtofastq v1.4.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [optimized + debuginfo] target(s) in 6.48s
[INFO] running `Command { std: "docker" "inspect" "02debf0a92f992486407f7fe2593ffe79c34fa2b1b73736dc16340c6368367b3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "02debf0a92f992486407f7fe2593ffe79c34fa2b1b73736dc16340c6368367b3", kill_on_drop: false }`
[INFO] [stdout] 02debf0a92f992486407f7fe2593ffe79c34fa2b1b73736dc16340c6368367b3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-22/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-22/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 401ca988c11f67692ea2e6f512027d8903f11b099631ad25024348499592e072
[INFO] running `Command { std: "docker" "start" "-a" "401ca988c11f67692ea2e6f512027d8903f11b099631ad25024348499592e072", kill_on_drop: false }`
[INFO] [stderr]     Finished test [optimized + debuginfo] target(s) in 0.06s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/bamtofastq-65f31e660a614387)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test tests::bad_bam ... ok
[INFO] [stdout] test tests::wrong_header ... ok
[INFO] [stdout] test tests::unpaired_record ... ok
[INFO] [stdout] test tests::test_cr12 ... ok
[INFO] [stdout] test tests::test_lr21 ... ok
[INFO] [stdout] test tests::test_lr20 ... ok
[INFO] [stdout] test tests::test_cr12_v1 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.18s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "401ca988c11f67692ea2e6f512027d8903f11b099631ad25024348499592e072", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "401ca988c11f67692ea2e6f512027d8903f11b099631ad25024348499592e072", kill_on_drop: false }`
[INFO] [stdout] 401ca988c11f67692ea2e6f512027d8903f11b099631ad25024348499592e072