[INFO] cloning repository https://github.com/0ncorhynchus/pdbstat [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/0ncorhynchus/pdbstat" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 4ad97d115b0b9b3e9628155b646db596a5063109 [INFO] testing 0ncorhynchus/pdbstat against 1.59.0 for beta-1.60-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat" "/workspace/builds/worker-3/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/0ncorhynchus/pdbstat on toolchain 1.59.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/0ncorhynchus/pdbstat [INFO] finished tweaking git repo https://github.com/0ncorhynchus/pdbstat [INFO] tweaked toml for git repo https://github.com/0ncorhynchus/pdbstat written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate git repo https://github.com/0ncorhynchus/pdbstat already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.59.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 175affc51deabe5e1e74dd51705e9863be69064bd766e2d4792e857b9dd74041 [INFO] running `Command { std: "docker" "start" "-a" "175affc51deabe5e1e74dd51705e9863be69064bd766e2d4792e857b9dd74041", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "175affc51deabe5e1e74dd51705e9863be69064bd766e2d4792e857b9dd74041", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "175affc51deabe5e1e74dd51705e9863be69064bd766e2d4792e857b9dd74041", kill_on_drop: false }` [INFO] [stdout] 175affc51deabe5e1e74dd51705e9863be69064bd766e2d4792e857b9dd74041 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+1.59.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b7de1b90f3506f19ae6988ef9f732a608f181e3007fd86d5cb441fc22192b9fb [INFO] running `Command { std: "docker" "start" "-a" "b7de1b90f3506f19ae6988ef9f732a608f181e3007fd86d5cb441fc22192b9fb", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.24 [INFO] [stderr] Compiling cmake v0.1.24 [INFO] [stderr] Compiling chemfiles-sys v0.7.40 [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.7.40` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-6322bf60875a23cd/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-29713d2521223aee/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-29713d2521223aee/out/build [INFO] [stderr] running: "cmake" "--build" "." 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Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:375: chemfiles/CMakeFiles/chemfiles.dir/src/selections/expr.cpp.o] Error 1 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:180: chemfiles/CMakeFiles/chemfiles.dir/src/Trajectory.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:336: chemfiles/CMakeFiles/chemfiles.dir/src/formats/PDB.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:271: chemfiles/CMakeFiles/chemfiles.dir/src/capi/selection.cpp.o] Error 1 [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:252: chemfiles/CMakeFiles/chemfiles.dir/all] Error 2 [INFO] [stderr] make: *** [Makefile:130: all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x556daf6db3ec - std::backtrace_rs::backtrace::libunwind::trace::h91c465e73bf6c785 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x556daf6db3ec - std::backtrace_rs::backtrace::trace_unsynchronized::hae9da36f5d58b5f3 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x556daf6db3ec - std::sys_common::backtrace::_print_fmt::h7f499fa126a7effb [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x556daf6db3ec - ::fmt::h3e2b509ce2ce6007 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x556daf6fcedc - core::fmt::write::h753c7571fa063ecb [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/fmt/mod.rs:1168:17 [INFO] [stderr] 5: 0x556daf6d6943 - std::io::Write::write_fmt::h2815c0519c99ba09 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/io/mod.rs:1660:15 [INFO] [stderr] 6: 0x556daf6dd562 - std::sys_common::backtrace::_print::h64941a6fc8b0ed9b [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x556daf6dd562 - std::sys_common::backtrace::print::hcf25e43e1a9b0766 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x556daf6dd562 - std::panicking::default_hook::{{closure}}::h78d3e6cf97fc623d [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:211:50 [INFO] [stderr] 9: 0x556daf6dd145 - std::panicking::default_hook::hda898f8d3ad1a5ae [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:228:9 [INFO] [stderr] 10: 0x556daf6ddbb3 - std::panicking::rust_panic_with_hook::h1a5ea2d6c23051aa [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:606:17 [INFO] [stderr] 11: 0x556daf6dd8d0 - std::panicking::begin_panic_handler::{{closure}}::h07f549390938b73f [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:502:13 [INFO] [stderr] 12: 0x556daf6db894 - std::sys_common::backtrace::__rust_end_short_backtrace::h5ec3758a92cfb00d [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stderr] 13: 0x556daf6dd609 - rust_begin_unwind [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:498:5 [INFO] [stderr] 14: 0x556daf68d3f1 - core::panicking::panic_fmt::h3a79a6a99affe1d5 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/panicking.rs:116:14 [INFO] [stderr] 15: 0x556daf695963 - cmake::fail::hf7b0814251084da3 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5 [INFO] [stderr] 16: 0x556daf695389 - cmake::run::h9f2c8c8e352bf218 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:574:9 [INFO] [stderr] 17: 0x556daf692f5f - cmake::Config::build::h5731848ee514332e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:481:9 [INFO] [stderr] 18: 0x556daf68dd4b - build_script_build::main::hac70643d9e7d8263 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/build.rs:19:15 [INFO] [stderr] 19: 0x556daf68efcb - core::ops::function::FnOnce::call_once::h0824a36668a9ce67 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 20: 0x556daf68f3ee - std::sys_common::backtrace::__rust_begin_short_backtrace::hd9617fdbcce5fc30 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stderr] 21: 0x556daf68f361 - std::rt::lang_start::{{closure}}::h55623776d84ded18 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/rt.rs:145:18 [INFO] [stderr] 22: 0x556daf6daaa0 - core::ops::function::impls:: for &F>::call_once::h443f738a8e9f947a [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x556daf6daaa0 - std::panicking::try::do_call::h1e21ba261ba489ec [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:406:40 [INFO] [stderr] 24: 0x556daf6daaa0 - std::panicking::try::h6afd48af8b6c96ac [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:370:19 [INFO] [stderr] 25: 0x556daf6daaa0 - std::panic::catch_unwind::h85dd95e0bab7fb60 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panic.rs:133:14 [INFO] [stderr] 26: 0x556daf6daaa0 - std::rt::lang_start_internal::{{closure}}::h038455e697c8b03e [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/rt.rs:128:48 [INFO] [stderr] 27: 0x556daf6daaa0 - std::panicking::try::do_call::h6b0ad65979f3077a [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:406:40 [INFO] [stderr] 28: 0x556daf6daaa0 - std::panicking::try::h010108d314169ac6 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panicking.rs:370:19 [INFO] [stderr] 29: 0x556daf6daaa0 - std::panic::catch_unwind::hff397f912b1535c2 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/panic.rs:133:14 [INFO] [stderr] 30: 0x556daf6daaa0 - std::rt::lang_start_internal::h52e73755f77c7dd9 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/rt.rs:128:20 [INFO] [stderr] 31: 0x556daf68f330 - std::rt::lang_start::h7437af50f46d69e8 [INFO] [stderr] at /rustc/9d1b2106e23b1abd32fce1f17267604a5102f57a/library/std/src/rt.rs:144:17 [INFO] [stderr] 32: 0x556daf68e87c - main [INFO] [stderr] 33: 0x7f043324c0b3 - __libc_start_main [INFO] [stderr] 34: 0x556daf68daee - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "b7de1b90f3506f19ae6988ef9f732a608f181e3007fd86d5cb441fc22192b9fb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b7de1b90f3506f19ae6988ef9f732a608f181e3007fd86d5cb441fc22192b9fb", kill_on_drop: false }` [INFO] [stdout] b7de1b90f3506f19ae6988ef9f732a608f181e3007fd86d5cb441fc22192b9fb