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[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this method call resolves to `<&[T; N] as IntoIterator>::into_iter` (due to backwards compatibility), but will resolve to <[T; N] as IntoIterator>::into_iter in Rust 2021.
[INFO] [stdout]    --> src/model/sample.rs:612:79
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.into_iter()) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(array_into_iter)]` on by default
[INFO] [stdout]     = warning: this changes meaning in Rust 2021
[INFO] [stdout]     = note: for more information, see issue #66145 <https://github.com/rust-lang/rust/issues/66145>
[INFO] [stdout] help: use `.iter()` instead of `.into_iter()` to avoid ambiguity
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.iter()) {
[INFO] [stdout]     |                                                                               ^^^^
[INFO] [stdout] help: or use `IntoIterator::into_iter(..)` instead of `.into_iter()` to explicitly iterate by value
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(IntoIterator::into_iter(true_alt_probs)) {
[INFO] [stdout]     |                                                                ^^^^^^^^^^^^^^^^^^^^^^^^              ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 34 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 20s
[INFO] running `Command { std: "docker" "inspect" "7b9e19020ec472b9658aae60fce7eac192d12f0888bbb65e98a95477af48232a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7b9e19020ec472b9658aae60fce7eac192d12f0888bbb65e98a95477af48232a", kill_on_drop: false }`
[INFO] [stdout] 7b9e19020ec472b9658aae60fce7eac192d12f0888bbb65e98a95477af48232a
