[INFO] fetching crate bio 0.38.0...
[INFO] checking bio-0.38.0 against 1.55.0 for beta-1.56-3
[INFO] extracting crate bio 0.38.0 into /workspace/builds/worker-51/source
[INFO] validating manifest of crates.io crate bio 0.38.0 on toolchain 1.55.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio 0.38.0
[INFO] finished tweaking crates.io crate bio 0.38.0
[INFO] tweaked toml for crates.io crate bio 0.38.0 written to /workspace/builds/worker-51/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rand_distr v0.4.2
[INFO] [stderr]   Downloaded pest_derive v2.1.0
[INFO] [stderr]   Downloaded matrixmultiply v0.3.1
[INFO] [stderr]   Downloaded simba v0.5.1
[INFO] [stderr]   Downloaded pest_meta v2.1.3
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded ndarray v0.15.3
[INFO] [stderr]   Downloaded statrs v0.15.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded pest_generator v2.1.3
[INFO] [stderr]   Downloaded nalgebra v0.27.1
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-51/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-51/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 1fabcdc907a062db63e587a44fc8e43356ba36996ee2ea9c21831c53cddad042
[INFO] running `Command { std: "docker" "start" "-a" "1fabcdc907a062db63e587a44fc8e43356ba36996ee2ea9c21831c53cddad042", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1fabcdc907a062db63e587a44fc8e43356ba36996ee2ea9c21831c53cddad042", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1fabcdc907a062db63e587a44fc8e43356ba36996ee2ea9c21831c53cddad042", kill_on_drop: false }`
[INFO] [stdout] 1fabcdc907a062db63e587a44fc8e43356ba36996ee2ea9c21831c53cddad042
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-51/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-51/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 808313b8b1307241de8009ffea0364c556ead922fd59a73d795ac0e261b52073
[INFO] running `Command { std: "docker" "start" "-a" "808313b8b1307241de8009ffea0364c556ead922fd59a73d795ac0e261b52073", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]    Compiling bio v0.38.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking strum v0.21.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]     Checking itertools v0.10.1
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]    Compiling serde_derive v1.0.130
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]    Compiling strum_macros v0.21.1
[INFO] [stderr]     Checking matrixmultiply v0.3.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling getset v0.1.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]     Checking approx v0.5.0
[INFO] [stderr]     Checking rand_distr v0.4.2
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking proptest v1.0.0
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]     Checking ndarray v0.15.3
[INFO] [stderr]     Checking thiserror v1.0.30
[INFO] [stderr]     Checking bio-types v0.12.0
[INFO] [stderr]     Checking serde v1.0.130
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stdout] warning: use of deprecated associated function `ndarray::impl_methods::<impl ndarray::ArrayBase<S, D>>::genrows`: Renamed to .rows()
[INFO] [stdout]    --> src/pattern_matching/pssm/mod.rs:299:27
[INFO] [stdout]     |
[INFO] [stdout] 299 |         for row in scores.genrows() {
[INFO] [stdout]     |                           ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `ndarray::impl_methods::<impl ndarray::ArrayBase<S, D>>::genrows`: Renamed to .rows()
[INFO] [stdout]    --> src/pattern_matching/pssm/mod.rs:299:27
[INFO] [stdout]     |
[INFO] [stdout] 299 |         for row in scores.genrows() {
[INFO] [stdout]     |                           ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 39.84s
[INFO] running `Command { std: "docker" "inspect" "808313b8b1307241de8009ffea0364c556ead922fd59a73d795ac0e261b52073", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "808313b8b1307241de8009ffea0364c556ead922fd59a73d795ac0e261b52073", kill_on_drop: false }`
[INFO] [stdout] 808313b8b1307241de8009ffea0364c556ead922fd59a73d795ac0e261b52073
