[INFO] fetching crate openmm-sys 7.4.1...
[INFO] checking openmm-sys-7.4.1 against 1.55.0 for beta-1.56-3
[INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-67/source
[INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 1.55.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate openmm-sys 7.4.1
[INFO] finished tweaking crates.io crate openmm-sys 7.4.1
[INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-67/source/Cargo.toml
[INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-67/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-67/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e4ea92a5976dc1ca102d543c88fac8346bc24b6b038781eda654a2b4817d675d
[INFO] running `Command { std: "docker" "start" "-a" "e4ea92a5976dc1ca102d543c88fac8346bc24b6b038781eda654a2b4817d675d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e4ea92a5976dc1ca102d543c88fac8346bc24b6b038781eda654a2b4817d675d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e4ea92a5976dc1ca102d543c88fac8346bc24b6b038781eda654a2b4817d675d", kill_on_drop: false }`
[INFO] [stdout] e4ea92a5976dc1ca102d543c88fac8346bc24b6b038781eda654a2b4817d675d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-67/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-67/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4e2d13b3ddc996f414761fe7348da09b9ac8402e633a57918f347bc5c4bf3f29
[INFO] running `Command { std: "docker" "start" "-a" "4e2d13b3ddc996f414761fe7348da09b9ac8402e633a57918f347bc5c4bf3f29", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.0.59
[INFO] [stderr]    Compiling cmake v0.1.44
[INFO] [stderr]    Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir)
[INFO] [stderr] The following warnings were emitted during compilation:
[INFO] [stderr] 
[INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library.
[INFO] [stderr] 
[INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-b15be25d85e6b44d/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library.
[INFO] [stderr]   running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-0916b7536a39a67c/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release"
[INFO] [stderr]   -- Found PythonInterp: /usr/bin/python (found version "2.7.18") 
[INFO] [stderr]   -- The C compiler identification is GNU 9.3.0
[INFO] [stderr]   -- The CXX compiler identification is GNU 9.3.0
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc -- works
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ -- works
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- Configuring incomplete, errors occurred!
[INFO] [stderr]   See also "/opt/rustwide/target/debug/build/openmm-sys-0916b7536a39a67c/out/build/CMakeFiles/CMakeOutput.log".
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   fatal: not a git repository (or any parent up to mount point /opt/rustwide)
[INFO] [stderr]   Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
[INFO] [stderr]   CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY):
[INFO] [stderr]     The OLD behavior for policy CMP0042 will be removed from a future version
[INFO] [stderr]     of CMake.
[INFO] [stderr] 
[INFO] [stderr]     The cmake-policies(7) manual explains that the OLD behaviors of all
[INFO] [stderr]     policies are deprecated and that a policy should be set to OLD only under
[INFO] [stderr]     specific short-term circumstances.  Projects should be ported to the NEW
[INFO] [stderr]     behavior and not rely on setting a policy to OLD.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message):
[INFO] [stderr]     Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
[INFO] [stderr]   Call Stack (most recent call first):
[INFO] [stderr]     /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE)
[INFO] [stderr]     /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args)
[INFO] [stderr]     wrappers/CMakeLists.txt:1 (find_package)
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at '
[INFO] [stderr]   command did not execute successfully, got: exit status: 1
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x56348267dd60 - std::backtrace_rs::backtrace::libunwind::trace::ha0ad43e8a952bfe7
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x56348267dd60 - std::backtrace_rs::backtrace::trace_unsynchronized::h6830419c0c4130dc
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x56348267dd60 - std::sys_common::backtrace::_print_fmt::h8f3516631ffa1ef5
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x56348267dd60 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::he1640d5f0d93f618
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x56348269ddbc - core::fmt::write::h88012e1f01caeebf
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/fmt/mod.rs:1115:17
[INFO] [stderr]      5:     0x56348267acb5 - std::io::Write::write_fmt::h360fa85b30182555
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/io/mod.rs:1665:15
[INFO] [stderr]      6:     0x5634826803cb - std::sys_common::backtrace::_print::ha1f00492f406a015
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x5634826803cb - std::sys_common::backtrace::print::hd54561b13feb6af3
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x5634826803cb - std::panicking::default_hook::{{closure}}::h84fe124cd0864662
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x56348267fea1 - std::panicking::default_hook::h5a8e74a76ce290a7
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:225:9
[INFO] [stderr]     10:     0x563482680a94 - std::panicking::rust_panic_with_hook::h67c812a4fe9d4c91
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:622:17
[INFO] [stderr]     11:     0x563482680577 - std::panicking::begin_panic_handler::{{closure}}::h33f9c1b96af300d7
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:519:13
[INFO] [stderr]     12:     0x56348267e25c - std::sys_common::backtrace::__rust_end_short_backtrace::h51bae64be5921f0e
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x5634826804d9 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:515:5
[INFO] [stderr]     14:     0x56348260dc1b - std::panicking::begin_panic_fmt::h7ab3d84aa4ae32a2
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:457:5
[INFO] [stderr]     15:     0x56348261c8fc - cmake::fail::hcba569af12fe5903
[INFO] [stderr]     16:     0x56348261c332 - cmake::run::h42dff502b960e451
[INFO] [stderr]     17:     0x56348261866d - cmake::Config::build::h11ddac8916f24b53
[INFO] [stderr]     18:     0x563482611820 - build_script_build::main::h9a9fe4e5b659dfc7
[INFO] [stderr]     19:     0x563482612c73 - core::ops::function::FnOnce::call_once::h0931eca242dae47b
[INFO] [stderr]     20:     0x5634826133b9 - std::sys_common::backtrace::__rust_begin_short_backtrace::h4bc71876232345ef
[INFO] [stderr]     21:     0x563482613129 - std::rt::lang_start::{{closure}}::h3e46472292aa81af
[INFO] [stderr]     22:     0x563482680f9a - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::ha9408abe89f69dc4
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     23:     0x563482680f9a - std::panicking::try::do_call::h5b0cc9e9102acb65
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:401:40
[INFO] [stderr]     24:     0x563482680f9a - std::panicking::try::hddc7f8229138b3ba
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:365:19
[INFO] [stderr]     25:     0x563482680f9a - std::panic::catch_unwind::hfa401ff8bab2986e
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:434:14
[INFO] [stderr]     26:     0x563482680f9a - std::rt::lang_start_internal::{{closure}}::h8163422320d11405
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/rt.rs:45:48
[INFO] [stderr]     27:     0x563482680f9a - std::panicking::try::do_call::hc742cc7bb4f0fb20
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:401:40
[INFO] [stderr]     28:     0x563482680f9a - std::panicking::try::ha37d8d2dd1acf7d3
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:365:19
[INFO] [stderr]     29:     0x563482680f9a - std::panic::catch_unwind::h8a5381d5ecf437bc
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:434:14
[INFO] [stderr]     30:     0x563482680f9a - std::rt::lang_start_internal::h7e2cee8c90d4a4d3
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/rt.rs:45:20
[INFO] [stderr]     31:     0x563482613101 - std::rt::lang_start::he3f2fb579a80d908
[INFO] [stderr]     32:     0x563482612453 - main
[INFO] [stderr]     33:     0x7f8fe131a0b3 - __libc_start_main
[INFO] [stderr]     34:     0x56348260ea9e - _start
[INFO] [stderr]     35:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "4e2d13b3ddc996f414761fe7348da09b9ac8402e633a57918f347bc5c4bf3f29", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4e2d13b3ddc996f414761fe7348da09b9ac8402e633a57918f347bc5c4bf3f29", kill_on_drop: false }`
[INFO] [stdout] 4e2d13b3ddc996f414761fe7348da09b9ac8402e633a57918f347bc5c4bf3f29
