[INFO] fetching crate netcdf 0.6.1...
[INFO] checking netcdf-0.6.1 against beta-2021-10-15 for beta-1.56-3
[INFO] extracting crate netcdf 0.6.1 into /workspace/builds/worker-45/source
[INFO] validating manifest of crates.io crate netcdf 0.6.1 on toolchain beta-2021-10-15
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-10-15" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate netcdf 0.6.1
[INFO] finished tweaking crates.io crate netcdf 0.6.1
[INFO] tweaked toml for crates.io crate netcdf 0.6.1 written to /workspace/builds/worker-45/source/Cargo.toml
[INFO] crate crates.io crate netcdf 0.6.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-10-15" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-45/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-45/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-10-15" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4699281e22895d8581fe078055e204d243787441e7d43c75ff271d7a09b8272e
[INFO] running `Command { std: "docker" "start" "-a" "4699281e22895d8581fe078055e204d243787441e7d43c75ff271d7a09b8272e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4699281e22895d8581fe078055e204d243787441e7d43c75ff271d7a09b8272e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4699281e22895d8581fe078055e204d243787441e7d43c75ff271d7a09b8272e", kill_on_drop: false }`
[INFO] [stdout] 4699281e22895d8581fe078055e204d243787441e7d43c75ff271d7a09b8272e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-45/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-45/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-10-15" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2cb5a71165904ad215ee7aceeb561cdb7bc5c295d154f8019315408ce1964cc5
[INFO] running `Command { std: "docker" "start" "-a" "2cb5a71165904ad215ee7aceeb561cdb7bc5c295d154f8019315408ce1964cc5", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.84
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling once_cell v1.5.2
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling regex-syntax v0.6.22
[INFO] [stderr]    Compiling syn v1.0.60
[INFO] [stderr]     Checking ppv-lite86 v0.2.10
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]    Compiling netcdf-sys v0.3.4
[INFO] [stderr]    Compiling unicode-segmentation v1.7.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking remove_dir_all v0.5.3
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling getrandom v0.2.2
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]    Compiling quote v1.0.8
[INFO] [stderr]    Compiling libloading v0.6.7
[INFO] [stderr]    Compiling thread_local v1.1.2
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling heck v0.3.2
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling aho-corasick v0.7.15
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking rand_core v0.6.1
[INFO] [stderr]     Checking rand_chacha v0.3.0
[INFO] [stderr]     Checking rand v0.8.3
[INFO] [stderr]    Compiling regex v1.4.3
[INFO] [stderr]     Checking tempfile v3.2.0
[INFO] [stderr]    Compiling structopt-derive v0.4.14
[INFO] [stderr]    Compiling hdf5-sys v0.7.1
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-575946ca456c2b01/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55b99bee916c - std::backtrace_rs::backtrace::libunwind::trace::h51faa62df48810e4
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x55b99bee916c - std::backtrace_rs::backtrace::trace_unsynchronized::h91de4d8e16d607e4
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x55b99bee916c - std::sys_common::backtrace::_print_fmt::h71b0935f97e4322c
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x55b99bee916c - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h9a78218788c14e18
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x55b99bf0844c - core::fmt::write::h3381b3176fe2b3d3
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/fmt/mod.rs:1150:17
[INFO] [stderr]      5:     0x55b99bee62e5 - std::io::Write::write_fmt::h1d5220480c7a2437
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/io/mod.rs:1667:15
[INFO] [stderr]      6:     0x55b99beeabd0 - std::sys_common::backtrace::_print::h4b77abc4d907ed0e
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x55b99beeabd0 - std::sys_common::backtrace::print::hb170c60b542377ad
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x55b99beeabd0 - std::panicking::default_hook::{{closure}}::h12bbda9af8901ee3
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:210:50
[INFO] [stderr]      9:     0x55b99beea787 - std::panicking::default_hook::h8c6c66d3f3ba6768
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:227:9
[INFO] [stderr]     10:     0x55b99beeb284 - std::panicking::rust_panic_with_hook::h36f2fa0bb09f4069
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:624:17
[INFO] [stderr]     11:     0x55b99bd11e62 - std::panicking::begin_panic::{{closure}}::h6915b40650444324
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:544:9
[INFO] [stderr]     12:     0x55b99bd11c09 - std::sys_common::backtrace::__rust_end_short_backtrace::hf917a1b40b5e2920
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x55b99bd11da3 - std::panicking::begin_panic::h7dd1660fa514e4f7
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:543:12
[INFO] [stderr]     14:     0x55b99bce1bf7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::hb93a24eb5b45fc89
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]     15:     0x55b99bce34b7 - build_script_build::main::h7d94b5962075f0ab
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9
[INFO] [stderr]     16:     0x55b99bce8c7b - core::ops::function::FnOnce::call_once::hb7625a6b95f0d4e9
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x55b99bcef60e - std::sys_common::backtrace::__rust_begin_short_backtrace::ha59e1004522ffd15
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x55b99bced911 - std::rt::lang_start::{{closure}}::h45d2eaef17dbee06
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:63:18
[INFO] [stderr]     19:     0x55b99beeb78a - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hc590b210ed55e22f
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x55b99beeb78a - std::panicking::try::do_call::h5f0600b7a33ea1af
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:403:40
[INFO] [stderr]     21:     0x55b99beeb78a - std::panicking::try::he15826df0f376a33
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:367:19
[INFO] [stderr]     22:     0x55b99beeb78a - std::panic::catch_unwind::hd8af3a578b6b4c86
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panic.rs:129:14
[INFO] [stderr]     23:     0x55b99beeb78a - std::rt::lang_start_internal::{{closure}}::h301d1329324ae1f0
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:45:48
[INFO] [stderr]     24:     0x55b99beeb78a - std::panicking::try::do_call::h941e8fdb0bd03655
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:403:40
[INFO] [stderr]     25:     0x55b99beeb78a - std::panicking::try::ha20a77bf65530f63
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:367:19
[INFO] [stderr]     26:     0x55b99beeb78a - std::panic::catch_unwind::h33afc061cc69ef90
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panic.rs:129:14
[INFO] [stderr]     27:     0x55b99beeb78a - std::rt::lang_start_internal::hc05c244593147106
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:45:20
[INFO] [stderr]     28:     0x55b99bced8e0 - std::rt::lang_start::hd725dec92cec7fb2
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:62:5
[INFO] [stderr]     29:     0x55b99bce49cc - main
[INFO] [stderr]     30:     0x7f07172920b3 - __libc_start_main
[INFO] [stderr]     31:     0x55b99bcdcede - _start
[INFO] [stderr]     32:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "2cb5a71165904ad215ee7aceeb561cdb7bc5c295d154f8019315408ce1964cc5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2cb5a71165904ad215ee7aceeb561cdb7bc5c295d154f8019315408ce1964cc5", kill_on_drop: false }`
[INFO] [stdout] 2cb5a71165904ad215ee7aceeb561cdb7bc5c295d154f8019315408ce1964cc5
