[INFO] fetching crate netcdf-sys 0.3.5...
[INFO] checking netcdf-sys-0.3.5 against 1.55.0 for beta-1.56-3
[INFO] extracting crate netcdf-sys 0.3.5 into /workspace/builds/worker-37/source
[INFO] validating manifest of crates.io crate netcdf-sys 0.3.5 on toolchain 1.55.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate netcdf-sys 0.3.5
[INFO] finished tweaking crates.io crate netcdf-sys 0.3.5
[INFO] tweaked toml for crates.io crate netcdf-sys 0.3.5 written to /workspace/builds/worker-37/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-37/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-37/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a99644b7f943463d6fe0a4c73b57112e48c7ae16a7b79adb9b6ecd2e14a12a9e
[INFO] running `Command { std: "docker" "start" "-a" "a99644b7f943463d6fe0a4c73b57112e48c7ae16a7b79adb9b6ecd2e14a12a9e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a99644b7f943463d6fe0a4c73b57112e48c7ae16a7b79adb9b6ecd2e14a12a9e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a99644b7f943463d6fe0a4c73b57112e48c7ae16a7b79adb9b6ecd2e14a12a9e", kill_on_drop: false }`
[INFO] [stdout] a99644b7f943463d6fe0a4c73b57112e48c7ae16a7b79adb9b6ecd2e14a12a9e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-37/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-37/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 492eeb5e9840e7168eb39604db01c26e7b576b42552196a4d278c9a29f32ae35
[INFO] running `Command { std: "docker" "start" "-a" "492eeb5e9840e7168eb39604db01c26e7b576b42552196a4d278c9a29f32ae35", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling netcdf-sys v0.3.5 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling libloading v0.6.7
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling hdf5-sys v0.7.1
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-4182afe12713ff5e/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5609f1cb32e0 - std::backtrace_rs::backtrace::libunwind::trace::ha0ad43e8a952bfe7
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x5609f1cb32e0 - std::backtrace_rs::backtrace::trace_unsynchronized::h6830419c0c4130dc
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x5609f1cb32e0 - std::sys_common::backtrace::_print_fmt::h8f3516631ffa1ef5
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x5609f1cb32e0 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::he1640d5f0d93f618
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x5609f1cd181c - core::fmt::write::h88012e1f01caeebf
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/fmt/mod.rs:1115:17
[INFO] [stderr]      5:     0x5609f1cb0735 - std::io::Write::write_fmt::h360fa85b30182555
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/io/mod.rs:1665:15
[INFO] [stderr]      6:     0x5609f1cb534b - std::sys_common::backtrace::_print::ha1f00492f406a015
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x5609f1cb534b - std::sys_common::backtrace::print::hd54561b13feb6af3
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x5609f1cb534b - std::panicking::default_hook::{{closure}}::h84fe124cd0864662
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x5609f1cb4e21 - std::panicking::default_hook::h5a8e74a76ce290a7
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:225:9
[INFO] [stderr]     10:     0x5609f1cb5a14 - std::panicking::rust_panic_with_hook::h67c812a4fe9d4c91
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:622:17
[INFO] [stderr]     11:     0x5609f1c50f83 - std::panicking::begin_panic::{{closure}}::ha4fa890cb7b8ef5c
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:542:9
[INFO] [stderr]     12:     0x5609f1c387e9 - std::sys_common::backtrace::__rust_end_short_backtrace::hf1c0d54ddf2f1065
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x5609f1c50eb9 - std::panicking::begin_panic::hf964e9b0c75f6fbd
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:541:12
[INFO] [stderr]     14:     0x5609f1aafeb7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h05a4648018afdbe9
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]     15:     0x5609f1ab16db - build_script_build::main::hedfe87fc19e70c5c
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9
[INFO] [stderr]     16:     0x5609f1ab55bb - core::ops::function::FnOnce::call_once::he790935760f7c4a3
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x5609f1abba4e - std::sys_common::backtrace::__rust_begin_short_backtrace::h437f77f7a706950a
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x5609f1ab9fa1 - std::rt::lang_start::{{closure}}::h9b4e42c4777106b3
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/rt.rs:63:18
[INFO] [stderr]     19:     0x5609f1cb5f1a - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::ha9408abe89f69dc4
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x5609f1cb5f1a - std::panicking::try::do_call::h5b0cc9e9102acb65
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:401:40
[INFO] [stderr]     21:     0x5609f1cb5f1a - std::panicking::try::hddc7f8229138b3ba
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:365:19
[INFO] [stderr]     22:     0x5609f1cb5f1a - std::panic::catch_unwind::hfa401ff8bab2986e
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:434:14
[INFO] [stderr]     23:     0x5609f1cb5f1a - std::rt::lang_start_internal::{{closure}}::h8163422320d11405
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/rt.rs:45:48
[INFO] [stderr]     24:     0x5609f1cb5f1a - std::panicking::try::do_call::hc742cc7bb4f0fb20
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:401:40
[INFO] [stderr]     25:     0x5609f1cb5f1a - std::panicking::try::ha37d8d2dd1acf7d3
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:365:19
[INFO] [stderr]     26:     0x5609f1cb5f1a - std::panic::catch_unwind::h8a5381d5ecf437bc
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:434:14
[INFO] [stderr]     27:     0x5609f1cb5f1a - std::rt::lang_start_internal::h7e2cee8c90d4a4d3
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/rt.rs:45:20
[INFO] [stderr]     28:     0x5609f1ab9f70 - std::rt::lang_start::h2268b11d8e833bbb
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/rt.rs:62:5
[INFO] [stderr]     29:     0x5609f1ab2bcc - main
[INFO] [stderr]     30:     0x7fe068ced0b3 - __libc_start_main
[INFO] [stderr]     31:     0x5609f1aaaf0e - _start
[INFO] [stderr]     32:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "492eeb5e9840e7168eb39604db01c26e7b576b42552196a4d278c9a29f32ae35", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "492eeb5e9840e7168eb39604db01c26e7b576b42552196a4d278c9a29f32ae35", kill_on_drop: false }`
[INFO] [stdout] 492eeb5e9840e7168eb39604db01c26e7b576b42552196a4d278c9a29f32ae35
