[INFO] cloning repository https://github.com/zaeleus/noodles
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8f3345585c014b1168cfd10caf14b09528c6b08f
[INFO] checking zaeleus/noodles against 1.55.0 for beta-1.56-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles" "/workspace/builds/worker-9/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/zaeleus/noodles on toolchain 1.55.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/zaeleus/noodles
[INFO] finished tweaking git repo https://github.com/zaeleus/noodles
[INFO] tweaked toml for git repo https://github.com/zaeleus/noodles written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ced7d5ba29e662895836ada4d5aa9b7dfe08ed1a550c5854564b9315a66fcc47
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "ced7d5ba29e662895836ada4d5aa9b7dfe08ed1a550c5854564b9315a66fcc47", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ced7d5ba29e662895836ada4d5aa9b7dfe08ed1a550c5854564b9315a66fcc47", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ced7d5ba29e662895836ada4d5aa9b7dfe08ed1a550c5854564b9315a66fcc47", kill_on_drop: false }`
[INFO] [stdout] ced7d5ba29e662895836ada4d5aa9b7dfe08ed1a550c5854564b9315a66fcc47
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4d0e2cefd0c00ea9e58eea63b719591d33b7d58dfebabf245bdaf2661fe87385
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "4d0e2cefd0c00ea9e58eea63b719591d33b7d58dfebabf245bdaf2661fe87385", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.80
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]    Compiling cc v1.0.71
[INFO] [stderr]     Checking noodles-fastq v0.2.0 (/opt/rustwide/workdir/noodles-fastq)
[INFO] [stderr]     Checking noodles v0.11.0 (/opt/rustwide/workdir/noodles)
[INFO] [stderr]    Compiling tokio v1.12.0
[INFO] [stderr]     Checking noodles-gff v0.3.0 (/opt/rustwide/workdir/noodles-gff)
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking flate2 v1.0.22
[INFO] [stderr]     Checking md-5 v0.9.1
[INFO] [stderr]     Checking noodles-bgzf v0.4.0 (/opt/rustwide/workdir/noodles-bgzf)
[INFO] [stderr]     Checking noodles-sam v0.6.0 (/opt/rustwide/workdir/noodles-sam)
[INFO] [stderr]     Checking noodles-csi v0.3.0 (/opt/rustwide/workdir/noodles-csi)
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]     Checking noodles-tabix v0.6.1 (/opt/rustwide/workdir/noodles-tabix)
[INFO] [stderr]     Checking xz2 v0.1.6
[INFO] [stderr]     Checking noodles-core v0.2.3 (/opt/rustwide/workdir/noodles-core)
[INFO] [stderr]     Checking noodles-bam v0.7.0 (/opt/rustwide/workdir/noodles-bam)
[INFO] [stderr]     Checking noodles-vcf v0.8.0 (/opt/rustwide/workdir/noodles-vcf)
[INFO] [stderr]     Checking noodles-fasta v0.3.1 (/opt/rustwide/workdir/noodles-fasta)
[INFO] [stderr]     Checking bzip2 v0.4.3
[INFO] [stderr]     Checking noodles-cram v0.7.0 (/opt/rustwide/workdir/noodles-cram)
[INFO] [stderr]     Checking noodles-bcf v0.6.1 (/opt/rustwide/workdir/noodles-bcf)
[INFO] [stderr]    Compiling tokio-macros v1.5.0
[INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `cram`
[INFO] [stdout]   --> noodles-cram/examples/cram_read_header_async.rs:16:54
[INFO] [stdout]    |
[INFO] [stdout] 16 |     let mut reader = File::open(src).await.map(cram::AsyncReader::new)?;
[INFO] [stdout]    |                                                      ^^^^^^^^^^^ could not find `AsyncReader` in `cram`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bcf`
[INFO] [stdout]   --> noodles-bcf/examples/bcf_read_header_async.rs:14:53
[INFO] [stdout]    |
[INFO] [stdout] 14 |     let mut reader = File::open(src).await.map(bcf::AsyncReader::new)?;
[INFO] [stdout]    |                                                     ^^^^^^^^^^^ could not find `AsyncReader` in `bcf`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0433`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `noodles-cram` due to 2 previous errors
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0433`.
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `cram`
[INFO] [stdout]   --> noodles-cram/examples/cram_count_async.rs:17:54
[INFO] [stdout]    |
[INFO] [stdout] 17 |     let mut reader = File::open(src).await.map(cram::AsyncReader::new)?;
[INFO] [stdout]    |                                                      ^^^^^^^^^^^ could not find `AsyncReader` in `cram`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncWriter` in `bam`
[INFO] [stdout]   --> noodles-bam/examples/bam_write_async.rs:16:27
[INFO] [stdout]    |
[INFO] [stdout] 16 |     let mut writer = bam::AsyncWriter::new(io::stdout());
[INFO] [stdout]    |                           ^^^^^^^^^^^ could not find `AsyncWriter` in `bam`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `tokio::io::BufReader`
[INFO] [stdout]   --> noodles-vcf/examples/vcf_reheader_async.rs:13:16
[INFO] [stdout]    |
[INFO] [stdout] 13 |     io::{self, BufReader},
[INFO] [stdout]    |                ^^^^^^^^^ no `BufReader` in `io`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `futures`
[INFO] [stdout]  --> noodles-vcf/examples/vcf_reheader_async.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use futures::TryStreamExt;
[INFO] [stdout]   |     ^^^^^^^ use of undeclared crate or module `futures`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `vcf`
[INFO] [stdout]   --> noodles-vcf/examples/vcf_reheader_async.rs:35:19
[INFO] [stdout]    |
[INFO] [stdout] 35 |         .map(vcf::AsyncReader::new)?;
[INFO] [stdout]    |                   ^^^^^^^^^^^ could not find `AsyncReader` in `vcf`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncWriter` in `vcf`
[INFO] [stdout]   --> noodles-vcf/examples/vcf_reheader_async.rs:40:27
[INFO] [stdout]    |
[INFO] [stdout] 40 |     let mut writer = vcf::AsyncWriter::new(io::stdout());
[INFO] [stdout]    |                           ^^^^^^^^^^^ could not find `AsyncWriter` in `vcf`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0433`.
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0433`.
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 4 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0432, E0433.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0432`.
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `futures`
[INFO] [stdout]  --> noodles-bam/examples/bam_view_async.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use futures::TryStreamExt;
[INFO] [stdout]   |     ^^^^^^^ use of undeclared crate or module `futures`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam`
[INFO] [stdout]   --> noodles-bam/examples/bam_view_async.rs:16:53
[INFO] [stdout]    |
[INFO] [stdout] 16 |     let mut reader = File::open(src).await.map(bam::AsyncReader::new)?;
[INFO] [stdout]    |                                                     ^^^^^^^^^^^ could not find `AsyncReader` in `bam`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 2 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0432, E0433.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0432`.
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam`
[INFO] [stdout]   --> noodles-bam/examples/bam_read_header_async.rs:17:53
[INFO] [stdout]    |
[INFO] [stdout] 17 |     let mut reader = File::open(src).await.map(bam::AsyncReader::new)?;
[INFO] [stdout]    |                                                     ^^^^^^^^^^^ could not find `AsyncReader` in `bam`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0433`.
[INFO] [stdout] 
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "4d0e2cefd0c00ea9e58eea63b719591d33b7d58dfebabf245bdaf2661fe87385", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4d0e2cefd0c00ea9e58eea63b719591d33b7d58dfebabf245bdaf2661fe87385", kill_on_drop: false }`
[INFO] [stdout] 4d0e2cefd0c00ea9e58eea63b719591d33b7d58dfebabf245bdaf2661fe87385
