[INFO] cloning repository https://github.com/swemeshy/counts_to_csv
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/swemeshy/counts_to_csv" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fswemeshy%2Fcounts_to_csv", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fswemeshy%2Fcounts_to_csv'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 416d6b6a25b07251ddbe10a79b9b16a97b0d73c7
[INFO] checking swemeshy/counts_to_csv against 1.55.0 for beta-1.56-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fswemeshy%2Fcounts_to_csv" "/workspace/builds/worker-0/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/swemeshy/counts_to_csv on toolchain 1.55.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/swemeshy/counts_to_csv
[INFO] finished tweaking git repo https://github.com/swemeshy/counts_to_csv
[INFO] tweaked toml for git repo https://github.com/swemeshy/counts_to_csv written to /workspace/builds/worker-0/source/Cargo.toml
[INFO] crate git repo https://github.com/swemeshy/counts_to_csv already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded indoc v0.3.6
[INFO] [stderr]   Downloaded inventory-impl v0.1.10
[INFO] [stderr]   Downloaded proc-macro-error-attr v1.0.4
[INFO] [stderr]   Downloaded proc-macro-error v1.0.4
[INFO] [stderr]   Downloaded termcolor v1.1.2
[INFO] [stderr]   Downloaded matrixmultiply v0.3.1
[INFO] [stderr]   Downloaded indoc-impl v0.3.6
[INFO] [stderr]   Downloaded winreg v0.8.0
[INFO] [stderr]   Downloaded terminal_size v0.1.16
[INFO] [stderr]   Downloaded console v0.14.1
[INFO] [stderr]   Downloaded aho-corasick v0.7.15
[INFO] [stderr]   Downloaded inventory v0.1.10
[INFO] [stderr]   Downloaded indicatif v0.15.0
[INFO] [stderr]   Downloaded libloading v0.7.0
[INFO] [stderr]   Downloaded unicode-segmentation v1.7.1
[INFO] [stderr]   Downloaded encode_unicode v0.3.6
[INFO] [stderr]   Downloaded regex v1.4.4
[INFO] [stderr]   Downloaded heck v0.3.2
[INFO] [stderr]   Downloaded ascii v1.0.0
[INFO] [stderr]   Downloaded clap_derive v3.0.0-beta.2
[INFO] [stderr]   Downloaded anyhow v1.0.38
[INFO] [stderr]   Downloaded ndarray v0.15.3
[INFO] [stderr]   Downloaded indexmap v1.6.2
[INFO] [stderr]   Downloaded regex-syntax v0.6.23
[INFO] [stderr]   Downloaded pyo3-macros v0.13.2
[INFO] [stderr]   Downloaded unindent v0.1.7
[INFO] [stderr]   Downloaded pyo3 v0.13.2
[INFO] [stderr]   Downloaded serde_derive v1.0.124
[INFO] [stderr]   Downloaded number_prefix v0.3.0
[INFO] [stderr]   Downloaded matrixmultiply v0.2.4
[INFO] [stderr]   Downloaded ndarray v0.13.1
[INFO] [stderr]   Downloaded ctor v0.1.20
[INFO] [stderr]   Downloaded crossbeam-epoch v0.9.3
[INFO] [stderr]   Downloaded serde v1.0.124
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.13.2
[INFO] [stderr]   Downloaded num-complex v0.4.0
[INFO] [stderr]   Downloaded hermit-abi v0.1.18
[INFO] [stderr]   Downloaded sprs v0.9.4
[INFO] [stderr]   Downloaded crossbeam-utils v0.8.3
[INFO] [stderr]   Downloaded syn v1.0.67
[INFO] [stderr]   Downloaded libc v0.2.88
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] fc0155974bf6ce9e9224af61b6521268defb917798d4166520fa4d8cbcf8c069
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "fc0155974bf6ce9e9224af61b6521268defb917798d4166520fa4d8cbcf8c069", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "fc0155974bf6ce9e9224af61b6521268defb917798d4166520fa4d8cbcf8c069", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fc0155974bf6ce9e9224af61b6521268defb917798d4166520fa4d8cbcf8c069", kill_on_drop: false }`
[INFO] [stdout] fc0155974bf6ce9e9224af61b6521268defb917798d4166520fa4d8cbcf8c069
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7c34f086291762811317b926ceaf330e92e949ddfb06089443a61a7cb2702e70
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "7c34f086291762811317b926ceaf330e92e949ddfb06089443a61a7cb2702e70", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.88
[INFO] [stderr]    Compiling syn v1.0.67
[INFO] [stderr]    Compiling hdf5-types v0.7.1 (https://github.com/aldanor/hdf5-rust.git?rev=24beeaa914a05c67adc78f0c161925fd4627d407#24beeaa9)
[INFO] [stderr]    Compiling inventory v0.1.10
[INFO] [stderr]    Compiling unindent v0.1.7
[INFO] [stderr]    Compiling hdf5 v0.7.1 (https://github.com/aldanor/hdf5-rust.git?rev=24beeaa914a05c67adc78f0c161925fd4627d407#24beeaa9)
[INFO] [stderr]     Checking ascii v1.0.0
[INFO] [stderr]    Compiling pyo3 v0.13.2
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking num-complex v0.2.4
[INFO] [stderr]    Compiling regex v1.4.4
[INFO] [stderr]     Checking ndarray v0.15.3
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]     Checking ndarray v0.13.1
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking parking_lot_core v0.8.3
[INFO] [stderr]     Checking time v0.1.44
[INFO] [stderr]     Checking terminal_size v0.1.16
[INFO] [stderr]     Checking colored v1.9.3
[INFO] [stderr]     Checking console v0.14.1
[INFO] [stderr]     Checking rayon-core v1.9.0
[INFO] [stderr]     Checking parking_lot v0.11.1
[INFO] [stderr]     Checking chrono v0.4.19
[INFO] [stderr]     Checking indicatif v0.15.0
[INFO] [stderr]     Checking rayon v1.5.0
[INFO] [stderr]    Compiling hdf5-sys v0.7.1 (https://github.com/aldanor/hdf5-rust.git?rev=24beeaa914a05c67adc78f0c161925fd4627d407#24beeaa9)
[INFO] [stderr]     Checking simple_logger v1.11.0
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1 (https://github.com/aldanor/hdf5-rust.git?rev=24beeaa914a05c67adc78f0c161925fd4627d407#24beeaa9)`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-6b6a2aee32adc33c/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/git/checkouts/hdf5-rust-c1072d7a2617f7d8/24beeaa/hdf5-sys/build.rs:547:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x561207d9d600 - std::backtrace_rs::backtrace::libunwind::trace::ha0ad43e8a952bfe7
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x561207d9d600 - std::backtrace_rs::backtrace::trace_unsynchronized::h6830419c0c4130dc
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x561207d9d600 - std::sys_common::backtrace::_print_fmt::h8f3516631ffa1ef5
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x561207d9d600 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::he1640d5f0d93f618
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x561207dbbb3c - core::fmt::write::h88012e1f01caeebf
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/fmt/mod.rs:1115:17
[INFO] [stderr]      5:     0x561207d9aa55 - std::io::Write::write_fmt::h360fa85b30182555
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/io/mod.rs:1665:15
[INFO] [stderr]      6:     0x561207d9f66b - std::sys_common::backtrace::_print::ha1f00492f406a015
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x561207d9f66b - std::sys_common::backtrace::print::hd54561b13feb6af3
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x561207d9f66b - std::panicking::default_hook::{{closure}}::h84fe124cd0864662
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x561207d9f141 - std::panicking::default_hook::h5a8e74a76ce290a7
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:225:9
[INFO] [stderr]     10:     0x561207d9fd34 - std::panicking::rust_panic_with_hook::h67c812a4fe9d4c91
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:622:17
[INFO] [stderr]     11:     0x561207bd42b3 - std::panicking::begin_panic::{{closure}}::h040c71b82db541c2
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:542:9
[INFO] [stderr]     12:     0x561207bd3f09 - std::sys_common::backtrace::__rust_end_short_backtrace::hc0db0c6926eac355
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x561207bd41e9 - std::panicking::begin_panic::h665435b71ddb99ed
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:541:12
[INFO] [stderr]     14:     0x561207ba3d67 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h3a23b0ad0b12303b
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/git/checkouts/hdf5-rust-c1072d7a2617f7d8/24beeaa/hdf5-sys/build.rs:547:13
[INFO] [stderr]     15:     0x561207ba558b - build_script_build::main::hcad439ac04f2ec3e
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/git/checkouts/hdf5-rust-c1072d7a2617f7d8/24beeaa/hdf5-sys/build.rs:645:9
[INFO] [stderr]     16:     0x561207ba8eab - core::ops::function::FnOnce::call_once::h153a32700fac98c4
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x561207bb1d0e - std::sys_common::backtrace::__rust_begin_short_backtrace::h2f894afd59e00256
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x561207bb0f41 - std::rt::lang_start::{{closure}}::h6bc9339e92558e12
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/rt.rs:63:18
[INFO] [stderr]     19:     0x561207da023a - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::ha9408abe89f69dc4
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x561207da023a - std::panicking::try::do_call::h5b0cc9e9102acb65
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:401:40
[INFO] [stderr]     21:     0x561207da023a - std::panicking::try::hddc7f8229138b3ba
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:365:19
[INFO] [stderr]     22:     0x561207da023a - std::panic::catch_unwind::hfa401ff8bab2986e
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:434:14
[INFO] [stderr]     23:     0x561207da023a - std::rt::lang_start_internal::{{closure}}::h8163422320d11405
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/rt.rs:45:48
[INFO] [stderr]     24:     0x561207da023a - std::panicking::try::do_call::hc742cc7bb4f0fb20
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:401:40
[INFO] [stderr]     25:     0x561207da023a - std::panicking::try::ha37d8d2dd1acf7d3
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:365:19
[INFO] [stderr]     26:     0x561207da023a - std::panic::catch_unwind::h8a5381d5ecf437bc
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:434:14
[INFO] [stderr]     27:     0x561207da023a - std::rt::lang_start_internal::h7e2cee8c90d4a4d3
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/rt.rs:45:20
[INFO] [stderr]     28:     0x561207bb0f10 - std::rt::lang_start::h670c0e97f9f7b933
[INFO] [stderr]                                  at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/rt.rs:62:5
[INFO] [stderr]     29:     0x561207ba6a7c - main
[INFO] [stderr]     30:     0x7f562901c0b3 - __libc_start_main
[INFO] [stderr]     31:     0x561207b9ef0e - _start
[INFO] [stderr]     32:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "7c34f086291762811317b926ceaf330e92e949ddfb06089443a61a7cb2702e70", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7c34f086291762811317b926ceaf330e92e949ddfb06089443a61a7cb2702e70", kill_on_drop: false }`
[INFO] [stdout] 7c34f086291762811317b926ceaf330e92e949ddfb06089443a61a7cb2702e70
