[INFO] cloning repository https://github.com/preiter93/ndspectral
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/preiter93/ndspectral" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Fndspectral", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Fndspectral'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b5fdf23d96d1c186715622f1b8f190b8a0e1f83c
[INFO] checking preiter93/ndspectral against beta-2021-10-15 for beta-1.56-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Fndspectral" "/workspace/builds/worker-3/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/preiter93/ndspectral on toolchain beta-2021-10-15
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-10-15" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/preiter93/ndspectral
[INFO] finished tweaking git repo https://github.com/preiter93/ndspectral
[INFO] tweaked toml for git repo https://github.com/preiter93/ndspectral written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate git repo https://github.com/preiter93/ndspectral already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-10-15" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-10-15" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] dac3f412ede879b5f9b02d4fa385f0107632394630eb8309f244dc81e7706fd7
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "dac3f412ede879b5f9b02d4fa385f0107632394630eb8309f244dc81e7706fd7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "dac3f412ede879b5f9b02d4fa385f0107632394630eb8309f244dc81e7706fd7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dac3f412ede879b5f9b02d4fa385f0107632394630eb8309f244dc81e7706fd7", kill_on_drop: false }`
[INFO] [stdout] dac3f412ede879b5f9b02d4fa385f0107632394630eb8309f244dc81e7706fd7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-10-15" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 64895c77dcfd0da3b50e20c5a3266c097a0947522ae81e40a3c90507bfbd7b4f
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "64895c77dcfd0da3b50e20c5a3266c097a0947522ae81e40a3c90507bfbd7b4f", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.102
[INFO] [stderr]    Compiling syn v1.0.77
[INFO] [stderr]     Checking strength_reduce v0.2.3
[INFO] [stderr]    Compiling hdf5-types v0.7.1 (/opt/rustwide/workdir/hdf5-interface/hdf5-rust/hdf5-types)
[INFO] [stderr]     Checking ascii v1.0.0
[INFO] [stderr]    Compiling hdf5 v0.7.1 (/opt/rustwide/workdir/hdf5-interface/hdf5-rust)
[INFO] [stderr]     Checking matrixmultiply v0.3.1
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]     Checking serde v1.0.130
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking num-integer v0.1.44
[INFO] [stderr]     Checking approx v0.4.0
[INFO] [stderr]     Checking num-complex v0.3.1
[INFO] [stderr]     Checking plotters v0.3.1
[INFO] [stderr]     Checking transpose v0.2.1
[INFO] [stderr]     Checking primal-check v0.3.1
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]     Checking rustfft v5.1.1
[INFO] [stderr]    Compiling dirs-sys v0.3.6
[INFO] [stderr]     Checking getrandom v0.2.3
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking cblas-sys v0.1.4
[INFO] [stderr]     Checking parking_lot_core v0.8.5
[INFO] [stderr]     Checking lapack-sys v0.12.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling dirs v3.0.2
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]     Checking rayon-core v1.9.1
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking parking_lot v0.11.2
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.4
[INFO] [stderr]     Checking rayon v1.5.1
[INFO] [stderr]     Checking rand_distr v0.4.2
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking serde_json v1.0.68
[INFO] [stderr]     Checking serde_cbor v0.11.2
[INFO] [stderr]     Checking rustfft v6.0.1
[INFO] [stderr]     Checking lapack v0.18.0
[INFO] [stderr]     Checking cauchy v0.4.0
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking ndarray v0.15.3
[INFO] [stderr]    Compiling hdf5-sys v0.7.1 (/opt/rustwide/workdir/hdf5-interface/hdf5-rust/hdf5-sys)
[INFO] [stderr]     Checking tinytemplate v1.2.1
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1 (/opt/rustwide/workdir/hdf5-interface/hdf5-rust/hdf5-sys)`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-25a4b2025a956164/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', hdf5-interface/hdf5-rust/hdf5-sys/build.rs:548:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5562a5e12a1c - std::backtrace_rs::backtrace::libunwind::trace::h51faa62df48810e4
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x5562a5e12a1c - std::backtrace_rs::backtrace::trace_unsynchronized::h91de4d8e16d607e4
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x5562a5e12a1c - std::sys_common::backtrace::_print_fmt::h71b0935f97e4322c
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x5562a5e12a1c - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h9a78218788c14e18
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x5562a5e31cdc - core::fmt::write::h3381b3176fe2b3d3
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/fmt/mod.rs:1150:17
[INFO] [stderr]      5:     0x5562a5e0fb95 - std::io::Write::write_fmt::h1d5220480c7a2437
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/io/mod.rs:1667:15
[INFO] [stderr]      6:     0x5562a5e14480 - std::sys_common::backtrace::_print::h4b77abc4d907ed0e
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x5562a5e14480 - std::sys_common::backtrace::print::hb170c60b542377ad
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x5562a5e14480 - std::panicking::default_hook::{{closure}}::h12bbda9af8901ee3
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:210:50
[INFO] [stderr]      9:     0x5562a5e14037 - std::panicking::default_hook::h8c6c66d3f3ba6768
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:227:9
[INFO] [stderr]     10:     0x5562a5e14b34 - std::panicking::rust_panic_with_hook::h36f2fa0bb09f4069
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:624:17
[INFO] [stderr]     11:     0x5562a5d511e2 - std::panicking::begin_panic::{{closure}}::hd0b58276c13d1dd1
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:544:9
[INFO] [stderr]     12:     0x5562a5d4add9 - std::sys_common::backtrace::__rust_end_short_backtrace::h9fe72048fd9588b7
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x5562a5d51123 - std::panicking::begin_panic::h078eabae1fb08de3
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:543:12
[INFO] [stderr]     14:     0x5562a5c0aca7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::hfb4ca078a273e635
[INFO] [stderr]                                  at /opt/rustwide/workdir/hdf5-interface/hdf5-rust/hdf5-sys/build.rs:548:13
[INFO] [stderr]     15:     0x5562a5c0c567 - build_script_build::main::h6ce2783cc5208831
[INFO] [stderr]                                  at /opt/rustwide/workdir/hdf5-interface/hdf5-rust/hdf5-sys/build.rs:646:9
[INFO] [stderr]     16:     0x5562a5c192eb - core::ops::function::FnOnce::call_once::h94279499be7479fa
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x5562a5c1864e - std::sys_common::backtrace::__rust_begin_short_backtrace::hb22ae9a80a9baf99
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x5562a5c14db1 - std::rt::lang_start::{{closure}}::hc7de326610abed64
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:63:18
[INFO] [stderr]     19:     0x5562a5e1503a - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hc590b210ed55e22f
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x5562a5e1503a - std::panicking::try::do_call::h5f0600b7a33ea1af
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:403:40
[INFO] [stderr]     21:     0x5562a5e1503a - std::panicking::try::he15826df0f376a33
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:367:19
[INFO] [stderr]     22:     0x5562a5e1503a - std::panic::catch_unwind::hd8af3a578b6b4c86
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panic.rs:129:14
[INFO] [stderr]     23:     0x5562a5e1503a - std::rt::lang_start_internal::{{closure}}::h301d1329324ae1f0
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:45:48
[INFO] [stderr]     24:     0x5562a5e1503a - std::panicking::try::do_call::h941e8fdb0bd03655
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:403:40
[INFO] [stderr]     25:     0x5562a5e1503a - std::panicking::try::ha20a77bf65530f63
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:367:19
[INFO] [stderr]     26:     0x5562a5e1503a - std::panic::catch_unwind::h33afc061cc69ef90
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panic.rs:129:14
[INFO] [stderr]     27:     0x5562a5e1503a - std::rt::lang_start_internal::hc05c244593147106
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:45:20
[INFO] [stderr]     28:     0x5562a5c14d80 - std::rt::lang_start::h216ba18da469eaa5
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:62:5
[INFO] [stderr]     29:     0x5562a5c0da7c - main
[INFO] [stderr]     30:     0x7f406d1c40b3 - __libc_start_main
[INFO] [stderr]     31:     0x5562a5c05ede - _start
[INFO] [stderr]     32:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "64895c77dcfd0da3b50e20c5a3266c097a0947522ae81e40a3c90507bfbd7b4f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "64895c77dcfd0da3b50e20c5a3266c097a0947522ae81e40a3c90507bfbd7b4f", kill_on_drop: false }`
[INFO] [stdout] 64895c77dcfd0da3b50e20c5a3266c097a0947522ae81e40a3c90507bfbd7b4f
