[INFO] cloning repository https://github.com/TyberiusPrime/snpdiffrs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TyberiusPrime/snpdiffrs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fsnpdiffrs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fsnpdiffrs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 07eba48d1dfda18d9310c72e315d37c492a4493e
[INFO] checking TyberiusPrime/snpdiffrs against beta-2021-10-15 for beta-1.56-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fsnpdiffrs" "/workspace/builds/worker-26/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-26/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/TyberiusPrime/snpdiffrs on toolchain beta-2021-10-15
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-10-15" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-26/source/.cargo/config
[INFO] started tweaking git repo https://github.com/TyberiusPrime/snpdiffrs
[INFO] finished tweaking git repo https://github.com/TyberiusPrime/snpdiffrs
[INFO] tweaked toml for git repo https://github.com/TyberiusPrime/snpdiffrs written to /workspace/builds/worker-26/source/Cargo.toml
[INFO] crate git repo https://github.com/TyberiusPrime/snpdiffrs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-10-15" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating git repository `https://github.com/rust-bio/rust-htslib/`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htslib.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded either v1.6.0
[INFO] [stderr]   Downloaded ndarray-stats v0.3.0
[INFO] [stderr]   Downloaded indexmap v1.5.2
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded ndarray v0.15.1
[INFO] [stderr]   Downloaded rust-argon2 v0.8.2
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded bincode v1.3.2
[INFO] [stderr]   Downloaded noisy_float v0.1.12
[INFO] [stderr]   Downloaded rayon v1.4.0
[INFO] [stderr]   Downloaded crossbeam v0.7.3
[INFO] [stderr]   Downloaded slog-async v2.5.0
[INFO] [stderr]   Downloaded ndarray v0.13.1
[INFO] [stderr]   Downloaded slog-term v2.6.0
[INFO] [stderr]   Downloaded lzzzz v0.8.0
[INFO] [stderr]   Downloaded matrixmultiply v0.3.0
[INFO] [stderr]   Downloaded rayon-core v1.8.1
[INFO] [stderr]   Downloaded crossbeam-channel v0.4.4
[INFO] [stderr]   Downloaded chrono v0.4.15
[INFO] [stderr]   Downloaded syn v1.0.39
[INFO] [stderr]   Downloaded progressing v3.0.2
[INFO] [stderr]   Downloaded safe-transmute v0.11.1
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded lzma-sys v0.1.16
[INFO] [stderr]   Downloaded bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]   Downloaded libc v0.2.77
[INFO] [stderr]   Downloaded libz-sys v1.1.1
[INFO] [stderr]   Downloaded curl-sys v0.4.36+curl-7.71.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-26/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-26/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-10-15" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ac7fc3ede26238617f69ae6af8372cbca55f47a6a1a17f114cb51dd0731e56b7
[INFO] running `Command { std: "docker" "start" "-a" "ac7fc3ede26238617f69ae6af8372cbca55f47a6a1a17f114cb51dd0731e56b7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ac7fc3ede26238617f69ae6af8372cbca55f47a6a1a17f114cb51dd0731e56b7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ac7fc3ede26238617f69ae6af8372cbca55f47a6a1a17f114cb51dd0731e56b7", kill_on_drop: false }`
[INFO] [stdout] ac7fc3ede26238617f69ae6af8372cbca55f47a6a1a17f114cb51dd0731e56b7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-26/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-26/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-10-15" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5bc85ab8ce8f6021e4771aefc67c3add18b3eb3c6d87a4d752554864d42e6c9a
[INFO] running `Command { std: "docker" "start" "-a" "5bc85ab8ce8f6021e4771aefc67c3add18b3eb3c6d87a4d752554864d42e6c9a", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.77
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling proc-macro2 v1.0.19
[INFO] [stderr]    Compiling syn v1.0.39
[INFO] [stderr]    Compiling serde_derive v1.0.115
[INFO] [stderr]    Compiling serde v1.0.115
[INFO] [stderr]    Compiling either v1.6.0
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling slog v2.5.2
[INFO] [stderr]    Compiling rayon-core v1.8.1
[INFO] [stderr]     Checking tinyvec v0.3.4
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling zstd-safe v2.0.6+zstd.1.4.7
[INFO] [stderr]     Checking regex-syntax v0.6.18
[INFO] [stderr]    Compiling nix v0.18.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking safe-transmute v0.11.1
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling memoffset v0.5.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling hashbrown v0.8.2
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling indexmap v1.5.2
[INFO] [stderr]    Compiling rayon v1.4.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]     Checking matrixmultiply v0.3.0
[INFO] [stderr]     Checking aho-corasick v0.7.13
[INFO] [stderr]     Checking progressing v3.0.2
[INFO] [stderr]     Checking crossbeam-channel v0.4.4
[INFO] [stderr]     Checking crossbeam-queue v0.2.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking unicode-normalization v0.1.13
[INFO] [stderr]     Checking slog-async v2.5.0
[INFO] [stderr]     Checking crossbeam-deque v0.7.3
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking crossbeam v0.7.3
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]     Checking noisy_float v0.1.12
[INFO] [stderr]     Checking approx v0.4.0
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]     Checking dirs-sys v0.3.5
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking time v0.1.44
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]     Checking dirs v2.0.2
[INFO] [stderr]    Compiling cc v1.0.67
[INFO] [stderr]     Checking threadpool v1.8.1
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking term v0.6.1
[INFO] [stderr]     Checking chrono v0.4.15
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]    Compiling openssl-src v111.10.2+1.1.1g
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling libz-sys v1.1.1
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling zstd-sys v1.4.18+zstd.1.4.7
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling hts-sys v1.10.3 (https://github.com/rust-bio/rust-htslib/#fa07d5ec)
[INFO] [stderr]    Compiling lzzzz v0.8.0
[INFO] [stderr]     Checking slog-term v2.6.0
[INFO] [stderr]     Checking ndarray-stats v0.3.0
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr] error: could not compile `nix`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name nix --edition=2018 /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/nix-0.18.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 -C metadata=6740d0069ecaa9f1 -C extra-filename=-6740d0069ecaa9f1 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern bitflags=/opt/rustwide/target/debug/deps/libbitflags-c4186936f71f7ec2.rmeta --extern cfg_if=/opt/rustwide/target/debug/deps/libcfg_if-f0be138ff93e7396.rmeta --extern libc=/opt/rustwide/target/debug/deps/liblibc-fc62ea9583f0dee8.rmeta --cap-lints allow --cap-lints=warn` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "5bc85ab8ce8f6021e4771aefc67c3add18b3eb3c6d87a4d752554864d42e6c9a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5bc85ab8ce8f6021e4771aefc67c3add18b3eb3c6d87a4d752554864d42e6c9a", kill_on_drop: false }`
[INFO] [stdout] 5bc85ab8ce8f6021e4771aefc67c3add18b3eb3c6d87a4d752554864d42e6c9a
