[INFO] cloning repository https://github.com/0ncorhynchus/pdbstat
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/0ncorhynchus/pdbstat" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4ad97d115b0b9b3e9628155b646db596a5063109
[INFO] checking 0ncorhynchus/pdbstat against beta-2021-10-15 for beta-1.56-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat" "/workspace/builds/worker-61/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-61/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/0ncorhynchus/pdbstat on toolchain beta-2021-10-15
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-10-15" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/0ncorhynchus/pdbstat
[INFO] finished tweaking git repo https://github.com/0ncorhynchus/pdbstat
[INFO] tweaked toml for git repo https://github.com/0ncorhynchus/pdbstat written to /workspace/builds/worker-61/source/Cargo.toml
[INFO] crate git repo https://github.com/0ncorhynchus/pdbstat already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-10-15" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-61/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-61/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-10-15" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 656d74de9691b6df720248f1fa8e31afbad7f7ae104edbc4c2f97da8b99e2d9f
[INFO] running `Command { std: "docker" "start" "-a" "656d74de9691b6df720248f1fa8e31afbad7f7ae104edbc4c2f97da8b99e2d9f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "656d74de9691b6df720248f1fa8e31afbad7f7ae104edbc4c2f97da8b99e2d9f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "656d74de9691b6df720248f1fa8e31afbad7f7ae104edbc4c2f97da8b99e2d9f", kill_on_drop: false }`
[INFO] [stdout] 656d74de9691b6df720248f1fa8e31afbad7f7ae104edbc4c2f97da8b99e2d9f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-61/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-61/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-10-15" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 37b8c31ca0c9eb4d4dda63cbc5bf48e2edda1cafa0ce67a85794ba438c71a92b
[INFO] running `Command { std: "docker" "start" "-a" "37b8c31ca0c9eb4d4dda63cbc5bf48e2edda1cafa0ce67a85794ba438c71a92b", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling gcc v0.3.51
[INFO] [stderr]     Checking libc v0.2.24
[INFO] [stderr]    Compiling cmake v0.1.24
[INFO] [stderr]    Compiling chemfiles-sys v0.7.40
[INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.7.40`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-4857b23a16f2fff0/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-1fdca8ab0c33cc50/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   -- The C compiler identification is GNU 9.3.0
[INFO] [stderr]   -- The CXX compiler identification is GNU 9.3.0
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc -- works
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ -- works
[INFO] [stderr]   -- Detecting CXX compiler ABI info
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[INFO] [stderr]   -- Unpacking fmt sources
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[INFO] [stderr]   -- Using unsigned short
[INFO] [stderr]   -- Check if the system is big endian - little endian
[INFO] [stderr]   -- Unpacking molfiles sources
[INFO] [stderr]   -- Configuring done
[INFO] [stderr]   -- Generating done
[INFO] [stderr]   -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-1fdca8ab0c33cc50/out/build
[INFO] [stderr]   running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" "-j128"
[INFO] [stderr]   Scanning dependencies of target chemfiles_files
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[INFO] [stderr]     of CMake.
[INFO] [stderr] 
[INFO] [stderr]     The cmake-policies(7) manual explains that the OLD behaviors of all
[INFO] [stderr]     policies are deprecated and that a policy should be set to OLD only under
[INFO] [stderr]     specific short-term circumstances.  Projects should be ported to the NEW
[INFO] [stderr]     behavior and not rely on setting a policy to OLD.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:180: chemfiles/CMakeFiles/chemfiles.dir/src/Trajectory.cpp.o] Error 1
[INFO] [stderr]   make[2]: *** Waiting for unfinished jobs....
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:128: chemfiles/CMakeFiles/chemfiles.dir/src/Frame.cpp.o] Error 1
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:115: chemfiles/CMakeFiles/chemfiles.dir/src/FormatFactory.cpp.o] Error 1
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:206: chemfiles/CMakeFiles/chemfiles.dir/src/capi/atom.cpp.o] Error 1
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:297: chemfiles/CMakeFiles/chemfiles.dir/src/capi/trajectory.cpp.o] Error 1
[INFO] [stderr]   make[1]: *** [CMakeFiles/Makefile2:252: chemfiles/CMakeFiles/chemfiles.dir/all] Error 2
[INFO] [stderr]   make: *** [Makefile:130: all] Error 2
[INFO] [stderr]   thread 'main' panicked at '
[INFO] [stderr]   command did not execute successfully, got: exit status: 2
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55daeaa150ac - std::backtrace_rs::backtrace::libunwind::trace::h51faa62df48810e4
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x55daeaa150ac - std::backtrace_rs::backtrace::trace_unsynchronized::h91de4d8e16d607e4
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x55daeaa150ac - std::sys_common::backtrace::_print_fmt::h71b0935f97e4322c
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x55daeaa150ac - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h9a78218788c14e18
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x55daeaa34cbc - core::fmt::write::h3381b3176fe2b3d3
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/fmt/mod.rs:1150:17
[INFO] [stderr]      5:     0x55daeaa12015 - std::io::Write::write_fmt::h1d5220480c7a2437
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/io/mod.rs:1667:15
[INFO] [stderr]      6:     0x55daeaa16d00 - std::sys_common::backtrace::_print::h4b77abc4d907ed0e
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x55daeaa16d00 - std::sys_common::backtrace::print::hb170c60b542377ad
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x55daeaa16d00 - std::panicking::default_hook::{{closure}}::h12bbda9af8901ee3
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:210:50
[INFO] [stderr]      9:     0x55daeaa168b7 - std::panicking::default_hook::h8c6c66d3f3ba6768
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:227:9
[INFO] [stderr]     10:     0x55daeaa173b4 - std::panicking::rust_panic_with_hook::h36f2fa0bb09f4069
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:624:17
[INFO] [stderr]     11:     0x55daeaa16e90 - std::panicking::begin_panic_handler::{{closure}}::h9c42b65a42d06a7a
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:521:13
[INFO] [stderr]     12:     0x55daeaa15574 - std::sys_common::backtrace::__rust_end_short_backtrace::hc791bddfe31e532c
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x55daeaa16df9 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:517:5
[INFO] [stderr]     14:     0x55daea9c3b6b - std::panicking::begin_panic_fmt::h32ac317c038a272d
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:460:5
[INFO] [stderr]     15:     0x55daea9cd5ab - cmake::fail::h00354d00e5b5672f
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5
[INFO] [stderr]     16:     0x55daea9ccfc9 - cmake::run::h7d2d679054ba8900
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:574:9
[INFO] [stderr]     17:     0x55daea9caadd - cmake::Config::build::h996a11619a22a5a9
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:481:9
[INFO] [stderr]     18:     0x55daea9c607b - build_script_build::main::h9dd0d31852e10c3d
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/build.rs:19:15
[INFO] [stderr]     19:     0x55daea9c5bfb - core::ops::function::FnOnce::call_once::h8939faa653a432ea
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     20:     0x55daea9c7dbe - std::sys_common::backtrace::__rust_begin_short_backtrace::h304aaf9bbfc7cbdb
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     21:     0x55daea9c5b61 - std::rt::lang_start::{{closure}}::h8228b52c656c540b
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:63:18
[INFO] [stderr]     22:     0x55daeaa178ba - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hc590b210ed55e22f
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     23:     0x55daeaa178ba - std::panicking::try::do_call::h5f0600b7a33ea1af
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:403:40
[INFO] [stderr]     24:     0x55daeaa178ba - std::panicking::try::he15826df0f376a33
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:367:19
[INFO] [stderr]     25:     0x55daeaa178ba - std::panic::catch_unwind::hd8af3a578b6b4c86
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panic.rs:129:14
[INFO] [stderr]     26:     0x55daeaa178ba - std::rt::lang_start_internal::{{closure}}::h301d1329324ae1f0
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:45:48
[INFO] [stderr]     27:     0x55daeaa178ba - std::panicking::try::do_call::h941e8fdb0bd03655
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:403:40
[INFO] [stderr]     28:     0x55daeaa178ba - std::panicking::try::ha20a77bf65530f63
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:367:19
[INFO] [stderr]     29:     0x55daeaa178ba - std::panic::catch_unwind::h33afc061cc69ef90
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panic.rs:129:14
[INFO] [stderr]     30:     0x55daeaa178ba - std::rt::lang_start_internal::hc05c244593147106
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:45:20
[INFO] [stderr]     31:     0x55daea9c5b30 - std::rt::lang_start::hb1febf1e378e8b2d
[INFO] [stderr]                                  at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:62:5
[INFO] [stderr]     32:     0x55daea9c6bfc - main
[INFO] [stderr]     33:     0x7f1ab64140b3 - __libc_start_main
[INFO] [stderr]     34:     0x55daea9c493e - _start
[INFO] [stderr]     35:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "37b8c31ca0c9eb4d4dda63cbc5bf48e2edda1cafa0ce67a85794ba438c71a92b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "37b8c31ca0c9eb4d4dda63cbc5bf48e2edda1cafa0ce67a85794ba438c71a92b", kill_on_drop: false }`
[INFO] [stdout] 37b8c31ca0c9eb4d4dda63cbc5bf48e2edda1cafa0ce67a85794ba438c71a92b
