[INFO] cloning repository https://github.com/Axect/Galmorph [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Axect/Galmorph" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAxect%2FGalmorph", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAxect%2FGalmorph'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 21de14073b013984b7f1daaaffb0d32e045eddb8 [INFO] checking Axect/Galmorph against beta-2021-10-15 for beta-1.56-3 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAxect%2FGalmorph" "/workspace/builds/worker-6/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Axect/Galmorph on toolchain beta-2021-10-15 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-10-15" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Axect/Galmorph [INFO] finished tweaking git repo https://github.com/Axect/Galmorph [INFO] tweaked toml for git repo https://github.com/Axect/Galmorph written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate git repo https://github.com/Axect/Galmorph already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-10-15" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded libloading v0.6.4 [INFO] [stderr] Downloaded cc v1.0.61 [INFO] [stderr] Downloaded matrixmultiply v0.2.3 [INFO] [stderr] Downloaded rand_distr v0.3.0 [INFO] [stderr] Downloaded hdf5-sys v0.7.0 [INFO] [stderr] Downloaded puruspe v0.1.4 [INFO] [stderr] Downloaded regex-syntax v0.6.19 [INFO] [stderr] Downloaded peroxide-ad v0.1.4 [INFO] [stderr] Downloaded puruda-macro v0.1.1 [INFO] [stderr] Downloaded netcdf v0.5.1 [INFO] [stderr] Downloaded peroxide v0.27.0 [INFO] [stderr] Downloaded netcdf-sys v0.3.2 [INFO] [stderr] Downloaded syn v1.0.44 [INFO] [stderr] Downloaded regex v1.4.0 [INFO] [stderr] Downloaded fitsio v0.16.0 [INFO] [stderr] Downloaded fitsio-sys v0.3.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-10-15" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 23eb8f4c139a0fd90b1bb5816520666f9c589872352d91169a67ee5e4b4c326c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "23eb8f4c139a0fd90b1bb5816520666f9c589872352d91169a67ee5e4b4c326c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "23eb8f4c139a0fd90b1bb5816520666f9c589872352d91169a67ee5e4b4c326c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "23eb8f4c139a0fd90b1bb5816520666f9c589872352d91169a67ee5e4b4c326c", kill_on_drop: false }` [INFO] [stdout] 23eb8f4c139a0fd90b1bb5816520666f9c589872352d91169a67ee5e4b4c326c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-10-15" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 65c8bb8c03dd9d0010705c0f85c1aa1f098f9c1f347943c16cf3bc191a36e082 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "65c8bb8c03dd9d0010705c0f85c1aa1f098f9c1f347943c16cf3bc191a36e082", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling regex-syntax v0.6.19 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling netcdf-sys v0.3.2 [INFO] [stderr] Compiling peroxide v0.27.0 [INFO] [stderr] Checking puruspe v0.1.4 [INFO] [stderr] Checking order-stat v0.1.3 [INFO] [stderr] Compiling puruda-macro v0.1.1 [INFO] [stderr] Compiling peroxide-ad v0.1.4 [INFO] [stderr] Compiling libloading v0.6.4 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling fitsio-sys v0.3.0 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking lapack-sys v0.12.1 [INFO] [stderr] Checking blas-sys v0.7.1 [INFO] [stderr] Checking fitsio v0.16.0 [INFO] [stderr] Checking num-complex v0.2.4 [INFO] [stderr] Checking rand_distr v0.3.0 [INFO] [stderr] Checking lapack v0.16.0 [INFO] [stderr] Checking blas v0.20.0 [INFO] [stderr] Compiling regex v1.4.0 [INFO] [stderr] Checking bstr v0.2.13 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Checking puruda v0.1.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-54fb166034003d5f/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x560ed7e95cec - std::backtrace_rs::backtrace::libunwind::trace::h51faa62df48810e4 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x560ed7e95cec - std::backtrace_rs::backtrace::trace_unsynchronized::h91de4d8e16d607e4 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x560ed7e95cec - std::sys_common::backtrace::_print_fmt::h71b0935f97e4322c [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x560ed7e95cec - ::fmt::h9a78218788c14e18 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x560ed7eb4fac - core::fmt::write::h3381b3176fe2b3d3 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/fmt/mod.rs:1150:17 [INFO] [stderr] 5: 0x560ed7e92e65 - std::io::Write::write_fmt::h1d5220480c7a2437 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x560ed7e97750 - std::sys_common::backtrace::_print::h4b77abc4d907ed0e [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x560ed7e97750 - std::sys_common::backtrace::print::hb170c60b542377ad [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x560ed7e97750 - std::panicking::default_hook::{{closure}}::h12bbda9af8901ee3 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x560ed7e97307 - std::panicking::default_hook::h8c6c66d3f3ba6768 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x560ed7e97e04 - std::panicking::rust_panic_with_hook::h36f2fa0bb09f4069 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x560ed7cc0a12 - std::panicking::begin_panic::{{closure}}::hfa947f057d21b211 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:544:9 [INFO] [stderr] 12: 0x560ed7cbaf59 - std::sys_common::backtrace::__rust_end_short_backtrace::h563426577a0edce3 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x560ed7cc0953 - std::panicking::begin_panic::h0013b4fb926e7102 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:543:12 [INFO] [stderr] 14: 0x560ed7c8fbf7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h4b6a4939dfebc9a0 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x560ed7c914b7 - build_script_build::main::h5f9c414bf99d7827 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x560ed7c9532b - core::ops::function::FnOnce::call_once::h4bc2d9e9f372cfde [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x560ed7c9bcae - std::sys_common::backtrace::__rust_begin_short_backtrace::h3b7bff3fbe9d2940 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x560ed7c96941 - std::rt::lang_start::{{closure}}::hecda1e8554533a46 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x560ed7e9830a - core::ops::function::impls:: for &F>::call_once::hc590b210ed55e22f [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x560ed7e9830a - std::panicking::try::do_call::h5f0600b7a33ea1af [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:403:40 [INFO] [stderr] 21: 0x560ed7e9830a - std::panicking::try::he15826df0f376a33 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:367:19 [INFO] [stderr] 22: 0x560ed7e9830a - std::panic::catch_unwind::hd8af3a578b6b4c86 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panic.rs:129:14 [INFO] [stderr] 23: 0x560ed7e9830a - std::rt::lang_start_internal::{{closure}}::h301d1329324ae1f0 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x560ed7e9830a - std::panicking::try::do_call::h941e8fdb0bd03655 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:403:40 [INFO] [stderr] 25: 0x560ed7e9830a - std::panicking::try::ha20a77bf65530f63 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:367:19 [INFO] [stderr] 26: 0x560ed7e9830a - std::panic::catch_unwind::h33afc061cc69ef90 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panic.rs:129:14 [INFO] [stderr] 27: 0x560ed7e9830a - std::rt::lang_start_internal::hc05c244593147106 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x560ed7c96910 - std::rt::lang_start::hd1ac6ffdfc39a13f [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x560ed7c929cc - main [INFO] [stderr] 30: 0x7efc6094e0b3 - __libc_start_main [INFO] [stderr] 31: 0x560ed7c8aede - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "65c8bb8c03dd9d0010705c0f85c1aa1f098f9c1f347943c16cf3bc191a36e082", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "65c8bb8c03dd9d0010705c0f85c1aa1f098f9c1f347943c16cf3bc191a36e082", kill_on_drop: false }` [INFO] [stdout] 65c8bb8c03dd9d0010705c0f85c1aa1f098f9c1f347943c16cf3bc191a36e082