[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ae36c59429e1ac7bc38bf4a4e6f3f2942bf58526 [INFO] checking 38/pyd4 against beta-2021-10-15 for beta-1.56-3 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-20/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-20/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain beta-2021-10-15 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-10-15" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-20/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-10-15" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-20/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-20/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-10-15" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e9820e3458b0460b18af1c7c10ccf2f795acfa8ebbfe8aa0ced089f0bf11806c [INFO] running `Command { std: "docker" "start" "-a" "e9820e3458b0460b18af1c7c10ccf2f795acfa8ebbfe8aa0ced089f0bf11806c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e9820e3458b0460b18af1c7c10ccf2f795acfa8ebbfe8aa0ced089f0bf11806c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e9820e3458b0460b18af1c7c10ccf2f795acfa8ebbfe8aa0ced089f0bf11806c", kill_on_drop: false }` [INFO] [stdout] e9820e3458b0460b18af1c7c10ccf2f795acfa8ebbfe8aa0ced089f0bf11806c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-20/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-20/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-10-15" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3f5ae242b645ac73351f0ca3d1f054abfa07d11cf7d24f6b0c8b70fc63dc2798 [INFO] running `Command { std: "docker" "start" "-a" "3f5ae242b645ac73351f0ca3d1f054abfa07d11cf7d24f6b0c8b70fc63dc2798", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling serde v1.0.127 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling inventory v0.1.10 [INFO] [stderr] Compiling unindent v0.1.7 [INFO] [stderr] Compiling pyo3 v0.12.4 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Checking instant v0.1.10 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Checking crossbeam-deque v0.8.1 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking d4-framefile v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] Checking serde_json v1.0.66 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.4 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling ctor v0.1.20 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling serde_derive v1.0.127 [INFO] [stderr] Compiling pyo3cls v0.12.4 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Compiling d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-aa11e85771e446b8/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-1514a73ad10ae241/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-1514a73ad10ae241/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ed26ea07cc - std::backtrace_rs::backtrace::libunwind::trace::h51faa62df48810e4 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55ed26ea07cc - std::backtrace_rs::backtrace::trace_unsynchronized::h91de4d8e16d607e4 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55ed26ea07cc - std::sys_common::backtrace::_print_fmt::h71b0935f97e4322c [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55ed26ea07cc - ::fmt::h9a78218788c14e18 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55ed26ec5f5c - core::fmt::write::h3381b3176fe2b3d3 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/fmt/mod.rs:1150:17 [INFO] [stderr] 5: 0x55ed26e9d2e5 - std::io::Write::write_fmt::h1d5220480c7a2437 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x55ed26ea2680 - std::sys_common::backtrace::_print::h4b77abc4d907ed0e [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55ed26ea2680 - std::sys_common::backtrace::print::hb170c60b542377ad [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55ed26ea2680 - std::panicking::default_hook::{{closure}}::h12bbda9af8901ee3 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x55ed26ea2237 - std::panicking::default_hook::h8c6c66d3f3ba6768 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55ed26ea2d34 - std::panicking::rust_panic_with_hook::h36f2fa0bb09f4069 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x55ed26ea27e2 - std::panicking::begin_panic_handler::{{closure}}::h9c42b65a42d06a7a [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:519:13 [INFO] [stderr] 12: 0x55ed26ea0c94 - std::sys_common::backtrace::__rust_end_short_backtrace::hc791bddfe31e532c [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55ed26ea2779 - rust_begin_unwind [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:517:5 [INFO] [stderr] 14: 0x55ed269528f1 - core::panicking::panic_fmt::hf9de31d4acbce4db [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/panicking.rs:101:14 [INFO] [stderr] 15: 0x55ed2695283d - core::panicking::panic::h8a6bc58a21c6c095 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55ed26953f2d - build_script_build::build_own_htslib::h1b2b61f938603a57 [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5 [INFO] [stderr] 17: 0x55ed269543a4 - build_script_build::main::h0217599aae204bb2 [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:66:9 [INFO] [stderr] 18: 0x55ed269550bb - core::ops::function::FnOnce::call_once::h7fa6bbaeeefa14aa [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55ed26954cde - std::sys_common::backtrace::__rust_begin_short_backtrace::ha418fd9688912291 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55ed269555b1 - std::rt::lang_start::{{closure}}::hb8d4b7b0428aafe3 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:63:18 [INFO] [stderr] 21: 0x55ed26ea333a - core::ops::function::impls:: for &F>::call_once::hc590b210ed55e22f [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55ed26ea333a - std::panicking::try::do_call::h5f0600b7a33ea1af [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:403:40 [INFO] [stderr] 23: 0x55ed26ea333a - std::panicking::try::he15826df0f376a33 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:367:19 [INFO] [stderr] 24: 0x55ed26ea333a - std::panic::catch_unwind::hd8af3a578b6b4c86 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panic.rs:129:14 [INFO] [stderr] 25: 0x55ed26ea333a - std::rt::lang_start_internal::{{closure}}::h301d1329324ae1f0 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:45:48 [INFO] [stderr] 26: 0x55ed26ea333a - std::panicking::try::do_call::h941e8fdb0bd03655 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:403:40 [INFO] [stderr] 27: 0x55ed26ea333a - std::panicking::try::ha20a77bf65530f63 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panicking.rs:367:19 [INFO] [stderr] 28: 0x55ed26ea333a - std::panic::catch_unwind::h33afc061cc69ef90 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/panic.rs:129:14 [INFO] [stderr] 29: 0x55ed26ea333a - std::rt::lang_start_internal::hc05c244593147106 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:45:20 [INFO] [stderr] 30: 0x55ed26955580 - std::rt::lang_start::ha6f131f80abcc724 [INFO] [stderr] at /rustc/58268ff091703ace98c3c2a8c5f2fb2c3aecace2/library/std/src/rt.rs:62:5 [INFO] [stderr] 31: 0x55ed26954a2c - main [INFO] [stderr] 32: 0x7fb3117050b3 - __libc_start_main [INFO] [stderr] 33: 0x55ed269530ee - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "3f5ae242b645ac73351f0ca3d1f054abfa07d11cf7d24f6b0c8b70fc63dc2798", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3f5ae242b645ac73351f0ca3d1f054abfa07d11cf7d24f6b0c8b70fc63dc2798", kill_on_drop: false }` [INFO] [stdout] 3f5ae242b645ac73351f0ca3d1f054abfa07d11cf7d24f6b0c8b70fc63dc2798