[INFO] fetching crate rustynuc 0.3.0... [INFO] testing rustynuc-0.3.0 against beta-2021-09-08 for beta-1.56-1 [INFO] extracting crate rustynuc 0.3.0 into /workspace/builds/worker-7/source [INFO] validating manifest of crates.io crate rustynuc 0.3.0 on toolchain beta-2021-09-08 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate rustynuc 0.3.0 [INFO] finished tweaking crates.io crate rustynuc 0.3.0 [INFO] tweaked toml for crates.io crate rustynuc 0.3.0 written to /workspace/builds/worker-7/source/Cargo.toml [INFO] crate crates.io crate rustynuc 0.3.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded derive-new v0.5.8 [INFO] [stderr] Downloaded ordered-float v1.1.0 [INFO] [stderr] Downloaded predicates v1.0.5 [INFO] [stderr] Downloaded assert_cmd v1.0.2 [INFO] [stderr] Downloaded multimap v0.6.0 [INFO] [stderr] Downloaded bio-types v0.7.0 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded niffler v2.2.0 [INFO] [stderr] Downloaded fishers_exact v1.0.1 [INFO] [stderr] Downloaded bio v0.30.1 [INFO] [stderr] Downloaded rust-htslib v0.31.0 [INFO] [stderr] Downloaded hts-sys v1.10.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ac25574ab36afdc830bbc048f0e52bb931a85cb714d18033fe9991628b47e637 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ac25574ab36afdc830bbc048f0e52bb931a85cb714d18033fe9991628b47e637", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ac25574ab36afdc830bbc048f0e52bb931a85cb714d18033fe9991628b47e637", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ac25574ab36afdc830bbc048f0e52bb931a85cb714d18033fe9991628b47e637", kill_on_drop: false }` [INFO] [stdout] ac25574ab36afdc830bbc048f0e52bb931a85cb714d18033fe9991628b47e637 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 166e7a7671aa9b50612bad9cdab9acb77dc25bcd9340504c5e00d6b1a8e0a46f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "166e7a7671aa9b50612bad9cdab9acb77dc25bcd9340504c5e00d6b1a8e0a46f", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling syn v1.0.53 [INFO] [stderr] Compiling serde_derive v1.0.118 [INFO] [stderr] Compiling serde v1.0.118 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling itoa v0.4.6 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling bio v0.30.1 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling fishers_exact v1.0.1 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling tinyvec v1.1.0 [INFO] [stderr] Compiling matrixmultiply v0.2.3 [INFO] [stderr] Compiling form_urlencoded v1.0.0 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling ordered-float v1.1.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling unicode-normalization v0.1.16 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Compiling flate2 v1.0.19 [INFO] [stderr] Compiling crossbeam-epoch v0.9.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling regex v1.4.2 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling hts-sys v1.10.3 [INFO] [stderr] Compiling url v2.2.0 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling thiserror-impl v1.0.22 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling structopt-derive v0.4.14 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling thiserror v1.0.22 [INFO] [stderr] Compiling niffler v2.2.0 [INFO] [stderr] Compiling snafu v0.6.10 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.14 [INFO] [stderr] Compiling bio-types v0.7.0 [INFO] [stderr] Compiling multimap v0.6.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rust-htslib v0.31.0 [INFO] [stderr] Compiling csv v1.1.5 [INFO] [stderr] Compiling structopt v0.3.21 [INFO] [stderr] Compiling rustynuc v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 33s [INFO] running `Command { std: "docker" "inspect" "166e7a7671aa9b50612bad9cdab9acb77dc25bcd9340504c5e00d6b1a8e0a46f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "166e7a7671aa9b50612bad9cdab9acb77dc25bcd9340504c5e00d6b1a8e0a46f", kill_on_drop: false }` [INFO] [stdout] 166e7a7671aa9b50612bad9cdab9acb77dc25bcd9340504c5e00d6b1a8e0a46f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 5deebb8266d1115edcb48f193fe71b86c0b0f053801f466b02c875d7c6f83de6 [INFO] running `Command { std: "docker" "start" "-a" "5deebb8266d1115edcb48f193fe71b86c0b0f053801f466b02c875d7c6f83de6", kill_on_drop: false }` [INFO] [stderr] Compiling serde_json v1.0.60 [INFO] [stderr] Compiling predicates-core v1.0.0 [INFO] [stderr] Compiling treeline v0.1.0 [INFO] [stderr] Compiling half v1.6.0 [INFO] [stderr] Compiling normalize-line-endings v0.3.0 [INFO] [stderr] Compiling walkdir v2.3.1 [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stderr] Compiling cast v0.2.3 [INFO] [stderr] Compiling float-cmp v0.8.0 [INFO] [stderr] Compiling plotters v0.2.15 [INFO] [stderr] Compiling predicates-tree v1.0.0 [INFO] [stderr] Compiling predicates v1.0.5 [INFO] [stderr] Compiling serde_cbor v0.11.1 [INFO] [stderr] Compiling assert_cmd v1.0.2 [INFO] [stderr] Compiling criterion-plot v0.4.3 [INFO] [stderr] Compiling tinytemplate v1.1.0 [INFO] [stderr] Compiling criterion v0.3.3 [INFO] [stderr] Compiling rustynuc v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 21.02s [INFO] running `Command { std: "docker" "inspect" "5deebb8266d1115edcb48f193fe71b86c0b0f053801f466b02c875d7c6f83de6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5deebb8266d1115edcb48f193fe71b86c0b0f053801f466b02c875d7c6f83de6", kill_on_drop: false }` [INFO] [stdout] 5deebb8266d1115edcb48f193fe71b86c0b0f053801f466b02c875d7c6f83de6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 72cc811bea5abf9ddff756dcfba393110300451ec163ee839c46adabc3db1f0d [INFO] running `Command { std: "docker" "start" "-a" "72cc811bea5abf9ddff756dcfba393110300451ec163ee839c46adabc3db1f0d", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.15s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rustynuc-213a10063cd03425) [INFO] [stdout] running 0 tests [INFO] [stderr] Running tests/tests.rs (/opt/rustwide/target/debug/deps/tests-ac66cab3897a0b3b) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 14 tests [INFO] [stdout] test cli_no_args ... ok [INFO] [stdout] test cli_no_such_file ... ok [INFO] [stdout] test cli_oxog_bcf ... ok [INFO] [stdout] test cli_oxog_bcf_skip_fishers ... ok [INFO] [stdout] test cli_warn_about_mnp ... ok [INFO] [stdout] test cli_dont_warn_as_no_mnp ... ok [INFO] [stdout] test cli_not_false_positive_oxog_one_freq_above_af_either_pass ... ok [INFO] [stdout] test cli_false_positive_oxog_as_not_above_either_or_both ... ok [INFO] [stdout] test cli_oxog_bam ... ok [INFO] [stdout] test cli_not_false_positive_as_they_pass_either_above_af ... ok [INFO] [stdout] test cli_normal_bam ... ok [INFO] [stdout] test cli_af_not_above_one ... ok [INFO] [stdout] test cli_not_oxog_as_above_either_pass ... ok [INFO] [stdout] test cli_print_all ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 14 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.38s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "72cc811bea5abf9ddff756dcfba393110300451ec163ee839c46adabc3db1f0d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "72cc811bea5abf9ddff756dcfba393110300451ec163ee839c46adabc3db1f0d", kill_on_drop: false }` [INFO] [stdout] 72cc811bea5abf9ddff756dcfba393110300451ec163ee839c46adabc3db1f0d