[INFO] fetching crate rust-htslib 0.38.2... [INFO] testing rust-htslib-0.38.2 against beta-2021-09-08 for beta-1.56-1 [INFO] extracting crate rust-htslib 0.38.2 into /workspace/builds/worker-10/source [INFO] validating manifest of crates.io crate rust-htslib 0.38.2 on toolchain beta-2021-09-08 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] removed /workspace/builds/worker-10/source/.cargo/config [INFO] started tweaking crates.io crate rust-htslib 0.38.2 [INFO] finished tweaking crates.io crate rust-htslib 0.38.2 [INFO] tweaked toml for crates.io crate rust-htslib 0.38.2 written to /workspace/builds/worker-10/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bio-types v0.12.0 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded libdeflate-sys v0.5.0 [INFO] [stderr] Downloaded hts-sys v2.0.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d9a526a8e1fd391eaa995de4e233dd541903acba74e83f467c3b845f3f405447 [INFO] running `Command { std: "docker" "start" "-a" "d9a526a8e1fd391eaa995de4e233dd541903acba74e83f467c3b845f3f405447", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d9a526a8e1fd391eaa995de4e233dd541903acba74e83f467c3b845f3f405447", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d9a526a8e1fd391eaa995de4e233dd541903acba74e83f467c3b845f3f405447", kill_on_drop: false }` [INFO] [stdout] d9a526a8e1fd391eaa995de4e233dd541903acba74e83f467c3b845f3f405447 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 224b7ace2c7b7c87b171a1ce672921982af940988c971c07758bb4b601f0374e [INFO] running `Command { std: "docker" "start" "-a" "224b7ace2c7b7c87b171a1ce672921982af940988c971c07758bb4b601f0374e", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.76 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling jobserver v0.1.24 [INFO] [stderr] Compiling cc v1.0.70 [INFO] [stderr] Compiling openssl-src v111.16.0+1.1.1l [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling openssl-sys v0.9.66 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling curl-sys v0.4.45+curl-7.78.0 [INFO] [stderr] Compiling hts-sys v2.0.2 [INFO] [stderr] Compiling thiserror-impl v1.0.29 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling thiserror v1.0.29 [INFO] [stderr] Compiling bio-types v0.12.0 [INFO] [stderr] Compiling rust-htslib v0.38.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 33.45s [INFO] running `Command { std: "docker" "inspect" "224b7ace2c7b7c87b171a1ce672921982af940988c971c07758bb4b601f0374e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "224b7ace2c7b7c87b171a1ce672921982af940988c971c07758bb4b601f0374e", kill_on_drop: false }` [INFO] [stdout] 224b7ace2c7b7c87b171a1ce672921982af940988c971c07758bb4b601f0374e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 75096edf6b81422ec8e5856c5e209f3844bfe7984c4af67454346bd1b66673ff [INFO] running `Command { std: "docker" "start" "-a" "75096edf6b81422ec8e5856c5e209f3844bfe7984c4af67454346bd1b66673ff", kill_on_drop: false }` [INFO] [stderr] Compiling pretty_assertions v0.6.1 [INFO] [stderr] Compiling rust-htslib v0.38.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 10.30s [INFO] running `Command { std: "docker" "inspect" "75096edf6b81422ec8e5856c5e209f3844bfe7984c4af67454346bd1b66673ff", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "75096edf6b81422ec8e5856c5e209f3844bfe7984c4af67454346bd1b66673ff", kill_on_drop: false }` [INFO] [stdout] 75096edf6b81422ec8e5856c5e209f3844bfe7984c4af67454346bd1b66673ff [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 0eeb6c38ecbd559f316afc648d33800c41ca64af7ee022ae91ad44beb36a4f3e [INFO] running `Command { std: "docker" "start" "-a" "0eeb6c38ecbd559f316afc648d33800c41ca64af7ee022ae91ad44beb36a4f3e", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rust_htslib-bd69e38837008a9b) [INFO] [stdout] [INFO] [stdout] running 118 tests [INFO] [stdout] test bam::buffer::tests::test_buffer ... ok [INFO] [stdout] test bam::ext::tests::test_infer_seq_len ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_block_pairs ... ok [INFO] [stdout] test bam::ext::tests::spliced_reads ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar_parsing_non_ascii_error ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar_parsing ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_read_orientation_f1r2 ... ok [INFO] [stdout] test bam::record::tests::test_cigar_parse ... ok [INFO] [stdout] test bam::record::tests::test_cigar_read_pos ... ok [INFO] [stdout] test bam::record::tests::test_cigar_string ... ok [INFO] [stdout] test bam::record::tests::test_clone ... ok [INFO] [stdout] test bam::ext::tests::test_introns ... ok [INFO] [stdout] test bam::pileup::tests::test_max_pileup ... ok [INFO] [stdout] test bam::record::tests::test_flags ... ok [INFO] [stdout] test bam::ext::tests::test_get_cigar_stats ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::tests::test_aux_arrays ... ok [INFO] [stdout] test bam::tests::test_aux_array_partial_eq ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_toml ... ok [INFO] [stdout] test bam::tests::test_aux_scalars ... ok [INFO] [stdout] test bam::tests::test_compression_level_conversion ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions ... ok [INFO] [stderr] [E::hts_open_format] Failed to open file "./test/bam2sam_out.sam" : Read-only file system [INFO] [stdout] test bam::tests::test_set_repeated ... ok [INFO] [stdout] test bam::tests::test_indexde_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::tests::test_read ... ok [INFO] [stdout] test bam::tests::test_set_record ... ok [INFO] [stdout] test bam::tests::parse_from_sam ... ok [INFO] [stdout] test bam::tests::test_set_qname2 ... ok [INFO] [stdout] test bam::tests::test_pileup ... ok [INFO] [stdout] test bcf::record::tests::test_missing_float ... ok [INFO] [stdout] test bam::tests::test_cigar_modes ... ok [INFO] [stdout] test bam::tests::test_set_qname ... ok [INFO] [stdout] test bam::tests::test_read_against_sam ... ok [INFO] [stdout] test bam::tests::test_remove_aux ... ok [INFO] [stdout] test bcf::record::tests::test_record_push_filter ... ok [INFO] [stdout] test bam::tests::test_seek ... ok [INFO] [stdout] test bam::tests::test_rc_records ... ok [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stdout] test bcf::tests::test_fails_on_bam ... ok [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 2 after 0 of 4 bytes [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 3 after 0 of 4 bytes [INFO] [stdout] test bcf::record::tests::test_record_has_filter_pass_is_default ... ok [INFO] [stdout] test bcf::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test bcf::record::tests::test_vector_end_float ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_pairs ... ok [INFO] [stdout] test bcf::record::tests::test_record_has_filter_custom ... ok [INFO] [stdout] test bam::tests::test_read_sam_header ... ok [INFO] [stdout] test bcf::record::tests::test_record_clear ... ok [INFO] [stdout] test bam::tests::test_read_indexed ... ok [INFO] [stdout] test bcf::tests::test_alt_allele_dosage ... ok [INFO] [stdout] test bam::ext::tests::test_reference_start_end ... ok [INFO] [stdout] test bcf::record::tests::test_record_end ... ok [INFO] [stdout] test bcf::tests::test_fetch ... ok [INFO] [stdout] test bam::tests::test_read_cram ... ok [INFO] [stdout] test bcf::tests::test_genotype_allele_conversion ... ok [INFO] [stdout] test bcf::tests::test_genotype_missing_allele_conversion ... ok [INFO] [stdout] test bcf::record::tests::test_record_set_filters ... ok [INFO] [stdout] test bcf::tests::test_genotypes ... ok [INFO] [stdout] test bcf::record::tests::test_record_rlen ... ok [INFO] [stdout] test bcf::tests::test_header_ids ... ok [INFO] [stdout] test bcf::tests::test_header_records ... ok [INFO] [stderr] [W::vcf_parse] Contig '19' is not defined in the header. (Quick workaround: index the file with tabix.) [INFO] [stdout] test bcf::record::tests::test_record_remove_filter ... ok [INFO] [stdout] test bcf::tests::test_obs_cornercase ... ok [INFO] [stdout] test bcf::tests::test_missing ... ok [INFO] [stdout] test bcf::tests::test_strings ... ok [INFO] [stdout] test bcf::tests::test_header_samples ... ok [INFO] [stdout] test bcf::tests::test_fetch_start_greater_than_last_vcf_pos ... ok [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stdout] test bcf::buffer::tests::test_buffer ... ok [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 2 after 0 of 4 bytes [INFO] [stdout] test bcf::tests::test_header_contigs ... ok [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stdout] test bgzf::tests::test_is_bgzip_plain ... ok [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 3 after 0 of 4 bytes [INFO] [stdout] test bcf::tests::test_remove_headers ... ok [INFO] [stdout] test bgzf::tests::test_open_bgzip ... ok [INFO] [stdout] test bam::tests::test_read_indexed_different_index_name ... ok [INFO] [stdout] test bcf::tests::test_write_various ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions_full ... ok [INFO] [stdout] test bgzf::tests::test_open_plain ... ok [INFO] [stdout] test bgzf::tests::test_open_gzip ... ok [INFO] [stdout] test bcf::tests::test_remove_alleles ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_start ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_between ... ok [INFO] [stdout] test bcf::tests::test_reader_set_threads ... ok [INFO] [stdout] test faidx::tests::faidx_read_twice_string ... ok [INFO] [stdout] test bam::tests::test_bam_header_sync ... ok [INFO] [stdout] test tbx::tests::bed_basic ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_first_base ... ok [INFO] [stderr] [E::idx_find_and_load] Could not retrieve index file for 'test/test_left.vcf' [INFO] [stderr] [E::idx_find_and_load] Could not retrieve index file for 'test/test.bam' [INFO] [stdout] test bcf::tests::test_svlen ... ok [INFO] [stdout] test faidx::tests::faidx_read_twice_bytes ... ok [INFO] [stdout] test bgzf::tests::test_set_threadpool ... ok [INFO] [stdout] test bcf::tests::test_read ... ok [INFO] [stdout] test tbx::tests::test_fails_on_vcf ... ok [INFO] [stdout] test tbx::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_iterator_api ... ok [INFO] [stdout] test tbx::tests::test_fails_on_bam ... ok [INFO] [stdout] test faidx::tests::faidx_position_too_large ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_end ... ok [INFO] [stderr] [E::hts_idx_load3] Could not load local index file 'test/tabix_reader/bad_header.txt.gz.tbi' [INFO] [stdout] test faidx::tests::faidx_open ... ok [INFO] [stdout] test bam::tests::test_write ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_read_api ... ok [INFO] [stdout] test bam::tests::test_copy_template ... ok [INFO] [stdout] test bcf::tests::test_synced_reader ... ok [INFO] [stdout] test bcf::tests::test_header_info_types ... ok [INFO] [stdout] test bcf::tests::test_fetch_open_ended ... ok [INFO] [stdout] test tbx::tests::test_text_bad_header ... ok [INFO] [stdout] test tbx::tests::test_text_header_regions ... ok [INFO] [stdout] test tbx::tests::test_text_header_positions ... ok [INFO] [stdout] test bam::tests::test_write_cram ... ok [INFO] [stdout] test bcf::tests::test_write ... ok [INFO] [stdout] test bcf::tests::test_synced_reader_fetch ... ok [INFO] [stdout] test bcf::tests::test_fetch_all ... ok [INFO] [stdout] test bcf::tests::test_writer_set_threads ... ok [INFO] [stdout] test bam::tests::test_write_compression ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag_number_a ... ok [INFO] [stdout] test bam::tests::test_idx_pileup ... ok [INFO] [stdout] test bam::index::tests::test_index_build ... FAILED [INFO] [stdout] test bam::pileup::tests::test_max_pileup_to_high - should panic ... ok [INFO] [stdout] test bam::tests::test_sam_writer_example ... FAILED [INFO] [stdout] test bam::ext::tests::test_aligned_pairs_full ... ok [INFO] [stdout] test bam::tests::test_write_threaded ... ok [INFO] [stdout] test bam::tests::test_write_shared_tpool ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- bam::index::tests::test_index_build stdout ---- [INFO] [stdout] thread 'bam::index::tests::test_index_build' panicked at 'called `Result::unwrap()` on an `Err` value: BamWriteIndex', src/bam/index.rs:72:51 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55dee02d12ec - std::backtrace_rs::backtrace::libunwind::trace::h51faa62df48810e4 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x55dee02d12ec - std::backtrace_rs::backtrace::trace_unsynchronized::h91de4d8e16d607e4 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x55dee02d12ec - std::sys_common::backtrace::_print_fmt::h71b0935f97e4322c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x55dee02d12ec - ::fmt::h9a78218788c14e18 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x55dee02f5f3c - core::fmt::write::h3381b3176fe2b3d3 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/fmt/mod.rs:1150:17 [INFO] [stdout] 5: 0x55dee02cd935 - std::io::Write::write_fmt::hb6383f24fe197d3c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/io/mod.rs:1667:15 [INFO] [stdout] 6: 0x55dee02d33c0 - std::sys_common::backtrace::_print::h4b77abc4d907ed0e [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x55dee02d33c0 - std::sys_common::backtrace::print::hb170c60b542377ad [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x55dee02d33c0 - std::panicking::default_hook::{{closure}}::h12bbda9af8901ee3 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:210:50 [INFO] [stdout] 9: 0x55dee02d2fb2 - std::panicking::default_hook::h8c6c66d3f3ba6768 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:224:9 [INFO] [stdout] 10: 0x55dee02d3a74 - std::panicking::rust_panic_with_hook::h36f2fa0bb09f4069 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:624:17 [INFO] [stdout] 11: 0x55dee02d3550 - std::panicking::begin_panic_handler::{{closure}}::h9c42b65a42d06a7a [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:521:13 [INFO] [stdout] 12: 0x55dee02d17b4 - std::sys_common::backtrace::__rust_end_short_backtrace::hc791bddfe31e532c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x55dee02d34b9 - rust_begin_unwind [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:517:5 [INFO] [stdout] 14: 0x55dedfbb4b01 - core::panicking::panic_fmt::hf9de31d4acbce4db [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panicking.rs:101:14 [INFO] [stdout] 15: 0x55dedfbb4bf3 - core::result::unwrap_failed::ha0c84e81219e5878 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/result.rs:1617:5 [INFO] [stdout] 16: 0x55dedfd605c2 - core::result::Result::unwrap::h7ad1e7f85a2752b4 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/result.rs:1299:23 [INFO] [stdout] 17: 0x55dedfd75534 - rust_htslib::bam::index::tests::test_index_build::h0a89d05a04b8c5c8 [INFO] [stdout] at /opt/rustwide/workdir/src/bam/index.rs:72:9 [INFO] [stdout] 18: 0x55dedfd7546a - rust_htslib::bam::index::tests::test_index_build::{{closure}}::h50bbe409369eba7b [INFO] [stdout] at /opt/rustwide/workdir/src/bam/index.rs:67:5 [INFO] [stdout] 19: 0x55dedfcb497e - core::ops::function::FnOnce::call_once::hc6eb7f8f487febf5 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 20: 0x55dedfdbf323 - core::ops::function::FnOnce::call_once::h61555a204318cc58 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x55dedfdbf323 - test::__rust_begin_short_backtrace::h8331e7b1cc7a6e62 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:578:5 [INFO] [stdout] 22: 0x55dedfdbdda8 - as core::ops::function::FnOnce>::call_once::h98582e597fa7f145 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 23: 0x55dedfdbdda8 - as core::ops::function::FnOnce<()>>::call_once::h38fa7a0826ecff45 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 24: 0x55dedfdbdda8 - std::panicking::try::do_call::h5b27d1cfffaa9f87 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:403:40 [INFO] [stdout] 25: 0x55dedfdbdda8 - std::panicking::try::h86f7124b3264bcbe [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:367:19 [INFO] [stdout] 26: 0x55dedfdbdda8 - std::panic::catch_unwind::h42dadf3598df7528 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panic.rs:129:14 [INFO] [stdout] 27: 0x55dedfdbdda8 - test::run_test_in_process::h9d4b7510f0910050 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:601:18 [INFO] [stdout] 28: 0x55dedfdbdda8 - test::run_test::run_test_inner::{{closure}}::h9b17f1fd181fe294 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:493:39 [INFO] [stdout] 29: 0x55dedfd8b8fe - test::run_test::run_test_inner::{{closure}}::h476f9211dfec6075 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:520:37 [INFO] [stdout] 30: 0x55dedfd8b8fe - std::sys_common::backtrace::__rust_begin_short_backtrace::h5c2db6945645950d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 31: 0x55dedfd90198 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h791169ea9ba5492d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/thread/mod.rs:481:17 [INFO] [stdout] 32: 0x55dedfd90198 - as core::ops::function::FnOnce<()>>::call_once::he930357ede3f4b4d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 33: 0x55dedfd90198 - std::panicking::try::do_call::h0de4b1dd08a9aa80 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:403:40 [INFO] [stdout] 34: 0x55dedfd90198 - std::panicking::try::hf5b5c530df698d97 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:367:19 [INFO] [stdout] 35: 0x55dedfd90198 - std::panic::catch_unwind::hed97078f17dbf191 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panic.rs:129:14 [INFO] [stdout] 36: 0x55dedfd90198 - std::thread::Builder::spawn_unchecked::{{closure}}::h2e673950929cba93 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/thread/mod.rs:480:30 [INFO] [stdout] 37: 0x55dedfd90198 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h8e18ddd18a52f010 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 38: 0x55dee02d9303 - as core::ops::function::FnOnce>::call_once::hbbbb32ef11ea0ad2 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 39: 0x55dee02d9303 - as core::ops::function::FnOnce>::call_once::h3b8ef23699fc5385 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 40: 0x55dee02d9303 - std::sys::unix::thread::Thread::new::thread_start::ha57f5cba35f709b7 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys/unix/thread.rs:106:17 [INFO] [stdout] 41: 0x7fe44a462609 - start_thread [INFO] [stdout] 42: 0x7fe44a232293 - clone [INFO] [stdout] 43: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- bam::tests::test_sam_writer_example stdout ---- [INFO] [stdout] thread 'bam::tests::test_sam_writer_example' panicked at 'called `Result::unwrap()` on an `Err` value: BamOpen { target: "./test/bam2sam_out.sam" }', src/bam/mod.rs:2272:83 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55dee02d12ec - std::backtrace_rs::backtrace::libunwind::trace::h51faa62df48810e4 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x55dee02d12ec - std::backtrace_rs::backtrace::trace_unsynchronized::h91de4d8e16d607e4 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x55dee02d12ec - std::sys_common::backtrace::_print_fmt::h71b0935f97e4322c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x55dee02d12ec - ::fmt::h9a78218788c14e18 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x55dee02f5f3c - core::fmt::write::h3381b3176fe2b3d3 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/fmt/mod.rs:1150:17 [INFO] [stdout] 5: 0x55dee02cd935 - std::io::Write::write_fmt::hb6383f24fe197d3c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/io/mod.rs:1667:15 [INFO] [stdout] 6: 0x55dee02d33c0 - std::sys_common::backtrace::_print::h4b77abc4d907ed0e [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x55dee02d33c0 - std::sys_common::backtrace::print::hb170c60b542377ad [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x55dee02d33c0 - std::panicking::default_hook::{{closure}}::h12bbda9af8901ee3 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:210:50 [INFO] [stdout] 9: 0x55dee02d2fb2 - std::panicking::default_hook::h8c6c66d3f3ba6768 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:224:9 [INFO] [stdout] 10: 0x55dee02d3a74 - std::panicking::rust_panic_with_hook::h36f2fa0bb09f4069 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:624:17 [INFO] [stdout] 11: 0x55dee02d3550 - std::panicking::begin_panic_handler::{{closure}}::h9c42b65a42d06a7a [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:521:13 [INFO] [stdout] 12: 0x55dee02d17b4 - std::sys_common::backtrace::__rust_end_short_backtrace::hc791bddfe31e532c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x55dee02d34b9 - rust_begin_unwind [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:517:5 [INFO] [stdout] 14: 0x55dedfbb4b01 - core::panicking::panic_fmt::hf9de31d4acbce4db [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panicking.rs:101:14 [INFO] [stdout] 15: 0x55dedfbb4bf3 - core::result::unwrap_failed::ha0c84e81219e5878 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/result.rs:1617:5 [INFO] [stdout] 16: 0x55dedfd60e9e - core::result::Result::unwrap::hd7d022b02c63d1c1 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/result.rs:1299:23 [INFO] [stdout] 17: 0x55dedfd0d64d - rust_htslib::bam::tests::test_sam_writer_example::from_bam_with_filter::h0e7d3a0c6799b9cd [INFO] [stdout] at /opt/rustwide/workdir/src/bam/mod.rs:2272:34 [INFO] [stdout] 18: 0x55dedfd0d0d5 - rust_htslib::bam::tests::test_sam_writer_example::hf8f9e7d6ba31a30b [INFO] [stdout] at /opt/rustwide/workdir/src/bam/mod.rs:2295:22 [INFO] [stdout] 19: 0x55dedfd0d04a - rust_htslib::bam::tests::test_sam_writer_example::{{closure}}::h90f84fa2dcb96b12 [INFO] [stdout] at /opt/rustwide/workdir/src/bam/mod.rs:2265:5 [INFO] [stdout] 20: 0x55dedfcb4a3e - core::ops::function::FnOnce::call_once::hc94e15eb85ee4d60 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x55dedfdbf323 - core::ops::function::FnOnce::call_once::h61555a204318cc58 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x55dedfdbf323 - test::__rust_begin_short_backtrace::h8331e7b1cc7a6e62 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:578:5 [INFO] [stdout] 23: 0x55dedfdbdda8 - as core::ops::function::FnOnce>::call_once::h98582e597fa7f145 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 24: 0x55dedfdbdda8 - as core::ops::function::FnOnce<()>>::call_once::h38fa7a0826ecff45 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 25: 0x55dedfdbdda8 - std::panicking::try::do_call::h5b27d1cfffaa9f87 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:403:40 [INFO] [stdout] 26: 0x55dedfdbdda8 - std::panicking::try::h86f7124b3264bcbe [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:367:19 [INFO] [stdout] 27: 0x55dedfdbdda8 - std::panic::catch_unwind::h42dadf3598df7528 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panic.rs:129:14 [INFO] [stdout] 28: 0x55dedfdbdda8 - test::run_test_in_process::h9d4b7510f0910050 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:601:18 [INFO] [stdout] 29: 0x55dedfdbdda8 - test::run_test::run_test_inner::{{closure}}::h9b17f1fd181fe294 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:493:39 [INFO] [stdout] 30: 0x55dedfd8b8fe - test::run_test::run_test_inner::{{closure}}::h476f9211dfec6075 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:520:37 [INFO] [stdout] 31: 0x55dedfd8b8fe - std::sys_common::backtrace::__rust_begin_short_backtrace::h5c2db6945645950d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 32: 0x55dedfd90198 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h791169ea9ba5492d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/thread/mod.rs:481:17 [INFO] [stdout] 33: 0x55dedfd90198 - as core::ops::function::FnOnce<()>>::call_once::he930357ede3f4b4d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 34: 0x55dedfd90198 - std::panicking::try::do_call::h0de4b1dd08a9aa80 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:403:40 [INFO] [stdout] 35: 0x55dedfd90198 - std::panicking::try::hf5b5c530df698d97 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:367:19 [INFO] [stdout] 36: 0x55dedfd90198 - std::panic::catch_unwind::hed97078f17dbf191 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panic.rs:129:14 [INFO] [stdout] 37: 0x55dedfd90198 - std::thread::Builder::spawn_unchecked::{{closure}}::h2e673950929cba93 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/thread/mod.rs:480:30 [INFO] [stdout] 38: 0x55dedfd90198 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h8e18ddd18a52f010 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x55dee02d9303 - as core::ops::function::FnOnce>::call_once::hbbbb32ef11ea0ad2 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 40: 0x55dee02d9303 - as core::ops::function::FnOnce>::call_once::h3b8ef23699fc5385 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 41: 0x55dee02d9303 - std::sys::unix::thread::Thread::new::thread_start::ha57f5cba35f709b7 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys/unix/thread.rs:106:17 [INFO] [stdout] 42: 0x7fe44a462609 - start_thread [INFO] [stdout] 43: 0x7fe44a232293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] bam::index::tests::test_index_build [INFO] [stdout] bam::tests::test_sam_writer_example [INFO] [stdout] [INFO] [stdout] test result: FAILED. 116 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.63s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `Command { std: "docker" "inspect" "0eeb6c38ecbd559f316afc648d33800c41ca64af7ee022ae91ad44beb36a4f3e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0eeb6c38ecbd559f316afc648d33800c41ca64af7ee022ae91ad44beb36a4f3e", kill_on_drop: false }` [INFO] [stdout] 0eeb6c38ecbd559f316afc648d33800c41ca64af7ee022ae91ad44beb36a4f3e