[INFO] fetching crate rnafamprob 0.1.0... [INFO] testing rnafamprob-0.1.0 against beta-2021-09-08 for beta-1.56-1 [INFO] extracting crate rnafamprob 0.1.0 into /workspace/builds/worker-12/source [INFO] validating manifest of crates.io crate rnafamprob 0.1.0 on toolchain beta-2021-09-08 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate rnafamprob 0.1.0 [INFO] finished tweaking crates.io crate rnafamprob 0.1.0 [INFO] tweaked toml for crates.io crate rnafamprob 0.1.0 written to /workspace/builds/worker-12/source/Cargo.toml [INFO] crate crates.io crate rnafamprob 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded multimap v0.4.0 [INFO] [stderr] Downloaded syn v1.0.5 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded bit-vec v0.4.4 [INFO] [stderr] Downloaded approx v0.1.1 [INFO] [stderr] Downloaded bytecount v0.3.2 [INFO] [stderr] Downloaded matrixmultiply v0.1.15 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded rna-ss-params v0.1.13 [INFO] [stderr] Downloaded rawpointer v0.1.0 [INFO] [stderr] Downloaded ndarray v0.9.1 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded bio v0.20.3 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded unreachable v1.0.0 [INFO] [stderr] Downloaded ordered-float v0.5.2 [INFO] [stderr] Downloaded ucd-util v0.1.5 [INFO] [stderr] Downloaded bv v0.7.4 [INFO] [stderr] Downloaded bit-set v0.4.0 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded itertools v0.6.5 [INFO] [stderr] Downloaded proc-macro2 v1.0.6 [INFO] [stderr] Downloaded bio-seq-algos v0.1.12 [INFO] [stderr] Downloaded rna-algos v0.1.10 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6e5e9596075614ad2aaa5290406aa5a4faa4479afe36b33e99c58b8823af2d8d [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6e5e9596075614ad2aaa5290406aa5a4faa4479afe36b33e99c58b8823af2d8d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6e5e9596075614ad2aaa5290406aa5a4faa4479afe36b33e99c58b8823af2d8d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6e5e9596075614ad2aaa5290406aa5a4faa4479afe36b33e99c58b8823af2d8d", kill_on_drop: false }` [INFO] [stdout] 6e5e9596075614ad2aaa5290406aa5a4faa4479afe36b33e99c58b8823af2d8d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d19a826f106df57eb5f44e2dca22bdfdf9a1012b6e0a609a35514a9a1b8dbe5e [INFO] running `Command { std: "docker" "start" "-a" "d19a826f106df57eb5f44e2dca22bdfdf9a1012b6e0a609a35514a9a1b8dbe5e", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling ucd-util v0.1.5 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling unreachable v1.0.0 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling bio-seq-algos v0.1.12 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling rna-ss-params v0.1.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling bio v0.20.3 [INFO] [stderr] Compiling rna-algos v0.1.10 [INFO] [stderr] Compiling rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:49:72 [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 53.44s [INFO] running `Command { std: "docker" "inspect" "d19a826f106df57eb5f44e2dca22bdfdf9a1012b6e0a609a35514a9a1b8dbe5e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d19a826f106df57eb5f44e2dca22bdfdf9a1012b6e0a609a35514a9a1b8dbe5e", kill_on_drop: false }` [INFO] [stdout] d19a826f106df57eb5f44e2dca22bdfdf9a1012b6e0a609a35514a9a1b8dbe5e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2ff01c67639ce98da34e7586dabc17320e5d58be20bcd52d432bb8427526c497 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2ff01c67639ce98da34e7586dabc17320e5d58be20bcd52d432bb8427526c497", kill_on_drop: false }` [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:49:72 [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:49:72 [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.86s [INFO] running `Command { std: "docker" "inspect" "2ff01c67639ce98da34e7586dabc17320e5d58be20bcd52d432bb8427526c497", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2ff01c67639ce98da34e7586dabc17320e5d58be20bcd52d432bb8427526c497", kill_on_drop: false }` [INFO] [stdout] 2ff01c67639ce98da34e7586dabc17320e5d58be20bcd52d432bb8427526c497 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 39eac201cd3cbe732cedd7cacd3bcbf42b2b7c1b90f27243aad9268d13a0f5c0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "39eac201cd3cbe732cedd7cacd3bcbf42b2b7c1b90f27243aad9268d13a0f5c0", kill_on_drop: false }` [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: `rnafamprob` (lib) generated 5 warnings (2 duplicates) [INFO] [stderr] warning: `rnafamprob` (lib test) generated 5 warnings (5 duplicates) [INFO] [stderr] warning: panic message is not a string literal [INFO] [stderr] --> src/main.rs:49:72 [INFO] [stderr] | [INFO] [stderr] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stderr] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: add a "{}" format string to Display the message [INFO] [stderr] | [INFO] [stderr] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stderr] | +++++ [INFO] [stderr] [INFO] [stderr] warning: `rnafamprob` (bin "rnafamprob") generated 1 warning [INFO] [stderr] warning: `rnafamprob` (bin "rnafamprob" test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.10s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rnafamprob-1840219e89ec2dfd) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rnafamprob-ed9e5d3f81f3a87c) [INFO] [stdout] running 0 tests [INFO] [stderr] Running tests/tests.rs (/opt/rustwide/target/debug/deps/tests-e9068763732d0c4b) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stderr] error: test failed, to rerun pass '--test tests' [INFO] [stdout] test test_rnafam_program ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_rnafam_program stdout ---- [INFO] [stdout] thread 'test_rnafam_program' panicked at 'Failed to run the RNAfamProb program.: Os { code: 2, kind: NotFound, message: "No such file or directory" }', tests/tests.rs:19:45 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x56539256314c - std::backtrace_rs::backtrace::libunwind::trace::h51faa62df48810e4 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x56539256314c - std::backtrace_rs::backtrace::trace_unsynchronized::h91de4d8e16d607e4 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x56539256314c - std::sys_common::backtrace::_print_fmt::h71b0935f97e4322c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x56539256314c - ::fmt::h9a78218788c14e18 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x56539258667c - core::fmt::write::h3381b3176fe2b3d3 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/fmt/mod.rs:1150:17 [INFO] [stdout] 5: 0x56539255fd95 - std::io::Write::write_fmt::hb6383f24fe197d3c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/io/mod.rs:1667:15 [INFO] [stdout] 6: 0x565392564e00 - std::sys_common::backtrace::_print::h4b77abc4d907ed0e [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x565392564e00 - std::sys_common::backtrace::print::hb170c60b542377ad [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x565392564e00 - std::panicking::default_hook::{{closure}}::h12bbda9af8901ee3 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:210:50 [INFO] [stdout] 9: 0x5653925649f2 - std::panicking::default_hook::h8c6c66d3f3ba6768 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:224:9 [INFO] [stdout] 10: 0x5653925654b4 - std::panicking::rust_panic_with_hook::h36f2fa0bb09f4069 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:624:17 [INFO] [stdout] 11: 0x565392564f90 - std::panicking::begin_panic_handler::{{closure}}::h9c42b65a42d06a7a [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:521:13 [INFO] [stdout] 12: 0x565392563614 - std::sys_common::backtrace::__rust_end_short_backtrace::hc791bddfe31e532c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x565392564ef9 - rust_begin_unwind [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:517:5 [INFO] [stdout] 14: 0x565392507651 - core::panicking::panic_fmt::hf9de31d4acbce4db [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panicking.rs:101:14 [INFO] [stdout] 15: 0x565392507743 - core::result::unwrap_failed::ha0c84e81219e5878 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/result.rs:1617:5 [INFO] [stdout] 16: 0x56539250c7ec - core::result::Result::expect::h026226070b6ae22e [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/result.rs:1259:23 [INFO] [stdout] 17: 0x565392509992 - tests::run_command::h56e10c88e79f446f [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:19:3 [INFO] [stdout] 18: 0x565392509aa0 - tests::test_rnafam_program::habf764f0de2c102a [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:12:3 [INFO] [stdout] 19: 0x5653925099ca - tests::test_rnafam_program::{{closure}}::h8390d5bb3cfcb10c [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:8:1 [INFO] [stdout] 20: 0x56539250b41e - core::ops::function::FnOnce::call_once::h4c7d53bb198da81a [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x565392540f73 - core::ops::function::FnOnce::call_once::h61555a204318cc58 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x565392540f73 - test::__rust_begin_short_backtrace::h8331e7b1cc7a6e62 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:578:5 [INFO] [stdout] 23: 0x56539253f9f8 - as core::ops::function::FnOnce>::call_once::h98582e597fa7f145 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 24: 0x56539253f9f8 - as core::ops::function::FnOnce<()>>::call_once::h38fa7a0826ecff45 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 25: 0x56539253f9f8 - std::panicking::try::do_call::h5b27d1cfffaa9f87 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:403:40 [INFO] [stdout] 26: 0x56539253f9f8 - std::panicking::try::h86f7124b3264bcbe [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:367:19 [INFO] [stdout] 27: 0x56539253f9f8 - std::panic::catch_unwind::h42dadf3598df7528 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panic.rs:129:14 [INFO] [stdout] 28: 0x56539253f9f8 - test::run_test_in_process::h9d4b7510f0910050 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:601:18 [INFO] [stdout] 29: 0x56539253f9f8 - test::run_test::run_test_inner::{{closure}}::h9b17f1fd181fe294 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:493:39 [INFO] [stdout] 30: 0x56539250d54e - test::run_test::run_test_inner::{{closure}}::h476f9211dfec6075 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:520:37 [INFO] [stdout] 31: 0x56539250d54e - std::sys_common::backtrace::__rust_begin_short_backtrace::h5c2db6945645950d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 32: 0x565392511de8 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h791169ea9ba5492d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/thread/mod.rs:481:17 [INFO] [stdout] 33: 0x565392511de8 - as core::ops::function::FnOnce<()>>::call_once::he930357ede3f4b4d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 34: 0x565392511de8 - std::panicking::try::do_call::h0de4b1dd08a9aa80 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:403:40 [INFO] [stdout] 35: 0x565392511de8 - std::panicking::try::hf5b5c530df698d97 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:367:19 [INFO] [stdout] 36: 0x565392511de8 - std::panic::catch_unwind::hed97078f17dbf191 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panic.rs:129:14 [INFO] [stdout] 37: 0x565392511de8 - std::thread::Builder::spawn_unchecked::{{closure}}::h2e673950929cba93 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/thread/mod.rs:480:30 [INFO] [stdout] 38: 0x565392511de8 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h8e18ddd18a52f010 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x56539256a253 - as core::ops::function::FnOnce>::call_once::hbbbb32ef11ea0ad2 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 40: 0x56539256a253 - as core::ops::function::FnOnce>::call_once::h3b8ef23699fc5385 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 41: 0x56539256a253 - std::sys::unix::thread::Thread::new::thread_start::ha57f5cba35f709b7 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys/unix/thread.rs:106:17 [INFO] [stdout] 42: 0x7ff504744609 - start_thread [INFO] [stdout] 43: 0x7ff504516293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_rnafam_program [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "39eac201cd3cbe732cedd7cacd3bcbf42b2b7c1b90f27243aad9268d13a0f5c0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "39eac201cd3cbe732cedd7cacd3bcbf42b2b7c1b90f27243aad9268d13a0f5c0", kill_on_drop: false }` [INFO] [stdout] 39eac201cd3cbe732cedd7cacd3bcbf42b2b7c1b90f27243aad9268d13a0f5c0