[INFO] fetching crate netcdf-sys 0.3.5...
[INFO] testing netcdf-sys-0.3.5 against beta-2021-09-08 for beta-1.56-1
[INFO] extracting crate netcdf-sys 0.3.5 into /workspace/builds/worker-3/source
[INFO] validating manifest of crates.io crate netcdf-sys 0.3.5 on toolchain beta-2021-09-08
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate netcdf-sys 0.3.5
[INFO] finished tweaking crates.io crate netcdf-sys 0.3.5
[INFO] tweaked toml for crates.io crate netcdf-sys 0.3.5 written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded winreg v0.8.0
[INFO] [stderr]   Downloaded hdf5-sys v0.7.1
[INFO] [stderr]   Downloaded hdf5-src v0.7.1
[INFO] [stderr]   Downloaded netcdf-src v0.1.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5b205058b83650ff8832dc83fbefe8981e7c611da1a953bb29fd6b07b21ee54b
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "5b205058b83650ff8832dc83fbefe8981e7c611da1a953bb29fd6b07b21ee54b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5b205058b83650ff8832dc83fbefe8981e7c611da1a953bb29fd6b07b21ee54b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5b205058b83650ff8832dc83fbefe8981e7c611da1a953bb29fd6b07b21ee54b", kill_on_drop: false }`
[INFO] [stdout] 5b205058b83650ff8832dc83fbefe8981e7c611da1a953bb29fd6b07b21ee54b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] a47e77c78cde6eeb9730de971b1e681e8b6b8d8190ce934b65267f1cb67197e6
[INFO] running `Command { std: "docker" "start" "-a" "a47e77c78cde6eeb9730de971b1e681e8b6b8d8190ce934b65267f1cb67197e6", kill_on_drop: false }`
[INFO] [stderr]    Compiling netcdf-sys v0.3.5 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling hdf5-sys v0.7.1
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-19942016eea0bd18/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55f2cab70d6c - std::backtrace_rs::backtrace::libunwind::trace::h51faa62df48810e4
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x55f2cab70d6c - std::backtrace_rs::backtrace::trace_unsynchronized::h91de4d8e16d607e4
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x55f2cab70d6c - std::sys_common::backtrace::_print_fmt::h71b0935f97e4322c
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x55f2cab70d6c - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h9a78218788c14e18
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x55f2cab9002c - core::fmt::write::h3381b3176fe2b3d3
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/fmt/mod.rs:1150:17
[INFO] [stderr]      5:     0x55f2cab6dee5 - std::io::Write::write_fmt::h1d5220480c7a2437
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/io/mod.rs:1667:15
[INFO] [stderr]      6:     0x55f2cab727d0 - std::sys_common::backtrace::_print::h4b77abc4d907ed0e
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x55f2cab727d0 - std::sys_common::backtrace::print::hb170c60b542377ad
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x55f2cab727d0 - std::panicking::default_hook::{{closure}}::h12bbda9af8901ee3
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:210:50
[INFO] [stderr]      9:     0x55f2cab72387 - std::panicking::default_hook::h8c6c66d3f3ba6768
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:227:9
[INFO] [stderr]     10:     0x55f2cab72e84 - std::panicking::rust_panic_with_hook::h36f2fa0bb09f4069
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:624:17
[INFO] [stderr]     11:     0x55f2caaaf552 - std::panicking::begin_panic::{{closure}}::hd0b58276c13d1dd1
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:544:9
[INFO] [stderr]     12:     0x55f2caaa9149 - std::sys_common::backtrace::__rust_end_short_backtrace::h9fe72048fd9588b7
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x55f2caaaf493 - std::panicking::begin_panic::h078eabae1fb08de3
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:543:12
[INFO] [stderr]     14:     0x55f2ca969d27 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h59797d249d41f794
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]     15:     0x55f2ca96b5e7 - build_script_build::main::h872836b722a2b255
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9
[INFO] [stderr]     16:     0x55f2ca96f45b - core::ops::function::FnOnce::call_once::h8945eb4d85a85741
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x55f2ca97598e - std::sys_common::backtrace::__rust_begin_short_backtrace::hb33e13650aaeb06b
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x55f2ca975a21 - std::rt::lang_start::{{closure}}::h839a3e0d498babaa
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/rt.rs:63:18
[INFO] [stderr]     19:     0x55f2cab7338a - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hc590b210ed55e22f
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x55f2cab7338a - std::panicking::try::do_call::h5f0600b7a33ea1af
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:403:40
[INFO] [stderr]     21:     0x55f2cab7338a - std::panicking::try::he15826df0f376a33
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:367:19
[INFO] [stderr]     22:     0x55f2cab7338a - std::panic::catch_unwind::hd8af3a578b6b4c86
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panic.rs:129:14
[INFO] [stderr]     23:     0x55f2cab7338a - std::rt::lang_start_internal::{{closure}}::h301d1329324ae1f0
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/rt.rs:45:48
[INFO] [stderr]     24:     0x55f2cab7338a - std::panicking::try::do_call::h941e8fdb0bd03655
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:403:40
[INFO] [stderr]     25:     0x55f2cab7338a - std::panicking::try::ha20a77bf65530f63
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:367:19
[INFO] [stderr]     26:     0x55f2cab7338a - std::panic::catch_unwind::h33afc061cc69ef90
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panic.rs:129:14
[INFO] [stderr]     27:     0x55f2cab7338a - std::rt::lang_start_internal::hc05c244593147106
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/rt.rs:45:20
[INFO] [stderr]     28:     0x55f2ca9759f0 - std::rt::lang_start::he9be90761860f214
[INFO] [stderr]                                  at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/rt.rs:62:5
[INFO] [stderr]     29:     0x55f2ca96cafc - main
[INFO] [stderr]     30:     0x7f34e6f170b3 - __libc_start_main
[INFO] [stderr]     31:     0x55f2ca964ede - _start
[INFO] [stderr]     32:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "a47e77c78cde6eeb9730de971b1e681e8b6b8d8190ce934b65267f1cb67197e6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a47e77c78cde6eeb9730de971b1e681e8b6b8d8190ce934b65267f1cb67197e6", kill_on_drop: false }`
[INFO] [stdout] a47e77c78cde6eeb9730de971b1e681e8b6b8d8190ce934b65267f1cb67197e6