[INFO] fetching crate global-supertrees 0.1.0... [INFO] testing global-supertrees-0.1.0 against beta-2021-09-08 for beta-1.56-1 [INFO] extracting crate global-supertrees 0.1.0 into /workspace/builds/worker-11/source [INFO] validating manifest of crates.io crate global-supertrees 0.1.0 on toolchain beta-2021-09-08 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate global-supertrees 0.1.0 [INFO] finished tweaking crates.io crate global-supertrees 0.1.0 [INFO] tweaked toml for crates.io crate global-supertrees 0.1.0 written to /workspace/builds/worker-11/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ndarray v0.12.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9e93b6188e41c3940037ee16aa0eb8f3fd7f209f81a78fe2453f0746d56b5505 [INFO] running `Command { std: "docker" "start" "-a" "9e93b6188e41c3940037ee16aa0eb8f3fd7f209f81a78fe2453f0746d56b5505", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9e93b6188e41c3940037ee16aa0eb8f3fd7f209f81a78fe2453f0746d56b5505", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9e93b6188e41c3940037ee16aa0eb8f3fd7f209f81a78fe2453f0746d56b5505", kill_on_drop: false }` [INFO] [stdout] 9e93b6188e41c3940037ee16aa0eb8f3fd7f209f81a78fe2453f0746d56b5505 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a5eaf5e5b6ead8108a6787ad1f163222e1b909d013b3cbd1334422fc9665c842 [INFO] running `Command { std: "docker" "start" "-a" "a5eaf5e5b6ead8108a6787ad1f163222e1b909d013b3cbd1334422fc9665c842", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:54:92 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:61:82 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/tree_merging.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trees` [INFO] [stdout] --> src/main.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let distance_matrices: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `merge_distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:102:4 [INFO] [stdout] | [INFO] [stdout] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 8.23s [INFO] running `Command { std: "docker" "inspect" "a5eaf5e5b6ead8108a6787ad1f163222e1b909d013b3cbd1334422fc9665c842", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a5eaf5e5b6ead8108a6787ad1f163222e1b909d013b3cbd1334422fc9665c842", kill_on_drop: false }` [INFO] [stdout] a5eaf5e5b6ead8108a6787ad1f163222e1b909d013b3cbd1334422fc9665c842 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 35200798f30ffce443f1f0ced31a9cf05b81388e940398eb18e9f49b201722a4 [INFO] running `Command { std: "docker" "start" "-a" "35200798f30ffce443f1f0ced31a9cf05b81388e940398eb18e9f49b201722a4", kill_on_drop: false }` [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:54:92 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:61:82 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/tree_merging.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trees` [INFO] [stdout] --> src/main.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let distance_matrices: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `merge_distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:102:4 [INFO] [stdout] | [INFO] [stdout] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.95s [INFO] running `Command { std: "docker" "inspect" "35200798f30ffce443f1f0ced31a9cf05b81388e940398eb18e9f49b201722a4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "35200798f30ffce443f1f0ced31a9cf05b81388e940398eb18e9f49b201722a4", kill_on_drop: false }` [INFO] [stdout] 35200798f30ffce443f1f0ced31a9cf05b81388e940398eb18e9f49b201722a4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 2d4ae1f20f5b594ebb7689efac6c5b2e781722aaf7f344b5beb49e9f9f395820 [INFO] running `Command { std: "docker" "start" "-a" "2d4ae1f20f5b594ebb7689efac6c5b2e781722aaf7f344b5beb49e9f9f395820", kill_on_drop: false }` [INFO] [stdout] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] running 16 tests [INFO] [stderr] --> src/utils.rs:54:92 [INFO] [stderr] | [INFO] [stderr] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:61:82 [INFO] [stderr] | [INFO] [stderr] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: unused import: `rayon::prelude` [INFO] [stderr] --> src/tree_merging.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use rayon::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `trees` [INFO] [stderr] --> src/main.rs:98:9 [INFO] [stderr] | [INFO] [stderr] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:10:9 [INFO] [stderr] | [INFO] [stderr] 10 | let distance_matrices: Vec = [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `merge_distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:102:4 [INFO] [stderr] | [INFO] [stderr] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `global-supertrees` (bin "global-supertrees" test) generated 6 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/global_supertrees-8a02b7ac3e097d6d) [INFO] [stdout] test tests::tests::test_to_dot ... ok [INFO] [stdout] test tests::tests::test_load_tree_file ... ok [INFO] [stdout] test tests::tests::test_find_first_common_ancestor ... ok [INFO] [stdout] test tests::tests::test_find_first_zero ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_3 ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_2 ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_1 ... ok [INFO] [stdout] test tests::tests::test_get_levels_from_root ... ok [INFO] [stdout] test tests::tests::test_batch_id_tax_mapping ... FAILED [INFO] [stdout] test tests::tests::test_merge_organisms ... FAILED [INFO] [stdout] test tests::tests::test_get_partial_tree ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium_nested ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium ... ok [INFO] [stdout] test tests::tests::test_neighbour_joining ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_simple ... ok [INFO] [stdout] test tests::tests::test_tree_merging ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_batch_id_tax_mapping stdout ---- [INFO] [stdout] thread 'tests::tests::test_batch_id_tax_mapping' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/uniprot.rs:34:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55ff805ed3dc - std::backtrace_rs::backtrace::libunwind::trace::h51faa62df48810e4 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x55ff805ed3dc - std::backtrace_rs::backtrace::trace_unsynchronized::h91de4d8e16d607e4 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x55ff805ed3dc - std::sys_common::backtrace::_print_fmt::h71b0935f97e4322c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x55ff805ed3dc - ::fmt::h9a78218788c14e18 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x55ff8061235c - core::fmt::write::h3381b3176fe2b3d3 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/fmt/mod.rs:1150:17 [INFO] [stdout] 5: 0x55ff805e9d45 - std::io::Write::write_fmt::hb6383f24fe197d3c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/io/mod.rs:1667:15 [INFO] [stdout] 6: 0x55ff805ef0e0 - std::sys_common::backtrace::_print::h4b77abc4d907ed0e [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x55ff805ef0e0 - std::sys_common::backtrace::print::hb170c60b542377ad [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x55ff805ef0e0 - std::panicking::default_hook::{{closure}}::h12bbda9af8901ee3 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:210:50 [INFO] [stdout] 9: 0x55ff805eecd2 - std::panicking::default_hook::h8c6c66d3f3ba6768 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:224:9 [INFO] [stdout] 10: 0x55ff805ef794 - std::panicking::rust_panic_with_hook::h36f2fa0bb09f4069 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:624:17 [INFO] [stdout] 11: 0x55ff805ef270 - std::panicking::begin_panic_handler::{{closure}}::h9c42b65a42d06a7a [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:521:13 [INFO] [stdout] 12: 0x55ff805ed8a4 - std::sys_common::backtrace::__rust_end_short_backtrace::hc791bddfe31e532c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x55ff805ef1d9 - rust_begin_unwind [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:517:5 [INFO] [stdout] 14: 0x55ff802b1b71 - core::panicking::panic_fmt::hf9de31d4acbce4db [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panicking.rs:101:14 [INFO] [stdout] 15: 0x55ff802b1c63 - core::result::unwrap_failed::ha0c84e81219e5878 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/result.rs:1617:5 [INFO] [stdout] 16: 0x55ff802e040f - core::result::Result::expect::h9cea571048f395a6 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/result.rs:1259:23 [INFO] [stdout] 17: 0x55ff803192b8 - global_supertrees::uniprot::load_mapping_file::h00f516cc3d2bcb7c [INFO] [stdout] at /opt/rustwide/workdir/src/uniprot.rs:34:13 [INFO] [stdout] 18: 0x55ff8030e418 - global_supertrees::tests::tests::test_batch_id_tax_mapping::hcb1d217e44299318 [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:230:26 [INFO] [stdout] 19: 0x55ff8030e2da - global_supertrees::tests::tests::test_batch_id_tax_mapping::{{closure}}::h72886880343f34d1 [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:227:5 [INFO] [stdout] 20: 0x55ff8035ae4e - core::ops::function::FnOnce::call_once::hf9eb8d2089726eab [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x55ff803aeae3 - core::ops::function::FnOnce::call_once::h61555a204318cc58 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x55ff803aeae3 - test::__rust_begin_short_backtrace::h8331e7b1cc7a6e62 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:578:5 [INFO] [stdout] 23: 0x55ff803ad568 - as core::ops::function::FnOnce>::call_once::h98582e597fa7f145 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 24: 0x55ff803ad568 - as core::ops::function::FnOnce<()>>::call_once::h38fa7a0826ecff45 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 25: 0x55ff803ad568 - std::panicking::try::do_call::h5b27d1cfffaa9f87 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:403:40 [INFO] [stdout] 26: 0x55ff803ad568 - std::panicking::try::h86f7124b3264bcbe [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:367:19 [INFO] [stdout] 27: 0x55ff803ad568 - std::panic::catch_unwind::h42dadf3598df7528 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panic.rs:129:14 [INFO] [stdout] 28: 0x55ff803ad568 - test::run_test_in_process::h9d4b7510f0910050 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:601:18 [INFO] [stdout] 29: 0x55ff803ad568 - test::run_test::run_test_inner::{{closure}}::h9b17f1fd181fe294 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:493:39 [INFO] [stdout] 30: 0x55ff8037b0be - test::run_test::run_test_inner::{{closure}}::h476f9211dfec6075 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:520:37 [INFO] [stdout] 31: 0x55ff8037b0be - std::sys_common::backtrace::__rust_begin_short_backtrace::h5c2db6945645950d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 32: 0x55ff8037f958 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h791169ea9ba5492d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/thread/mod.rs:481:17 [INFO] [stdout] 33: 0x55ff8037f958 - as core::ops::function::FnOnce<()>>::call_once::he930357ede3f4b4d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 34: 0x55ff8037f958 - std::panicking::try::do_call::h0de4b1dd08a9aa80 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:403:40 [INFO] [stdout] 35: 0x55ff8037f958 - std::panicking::try::hf5b5c530df698d97 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:367:19 [INFO] [stdout] 36: 0x55ff8037f958 - std::panic::catch_unwind::hed97078f17dbf191 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panic.rs:129:14 [INFO] [stdout] 37: 0x55ff8037f958 - std::thread::Builder::spawn_unchecked::{{closure}}::h2e673950929cba93 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/thread/mod.rs:480:30 [INFO] [stdout] 38: 0x55ff8037f958 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h8e18ddd18a52f010 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x55ff805f45c3 - as core::ops::function::FnOnce>::call_once::hbbbb32ef11ea0ad2 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 40: 0x55ff805f45c3 - as core::ops::function::FnOnce>::call_once::h3b8ef23699fc5385 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 41: 0x55ff805f45c3 - std::sys::unix::thread::Thread::new::thread_start::ha57f5cba35f709b7 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys/unix/thread.rs:106:17 [INFO] [stdout] 42: 0x7f4f24695609 - start_thread [INFO] [stdout] 43: 0x7f4f24467293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_merge_organisms stdout ---- [INFO] [stdout] thread 'tests::tests::test_merge_organisms' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/uniprot.rs:34:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55ff805ed3dc - std::backtrace_rs::backtrace::libunwind::trace::h51faa62df48810e4 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x55ff805ed3dc - std::backtrace_rs::backtrace::trace_unsynchronized::h91de4d8e16d607e4 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x55ff805ed3dc - std::sys_common::backtrace::_print_fmt::h71b0935f97e4322c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x55ff805ed3dc - ::fmt::h9a78218788c14e18 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x55ff8061235c - core::fmt::write::h3381b3176fe2b3d3 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/fmt/mod.rs:1150:17 [INFO] [stdout] 5: 0x55ff805e9d45 - std::io::Write::write_fmt::hb6383f24fe197d3c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/io/mod.rs:1667:15 [INFO] [stdout] 6: 0x55ff805ef0e0 - std::sys_common::backtrace::_print::h4b77abc4d907ed0e [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x55ff805ef0e0 - std::sys_common::backtrace::print::hb170c60b542377ad [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x55ff805ef0e0 - std::panicking::default_hook::{{closure}}::h12bbda9af8901ee3 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:210:50 [INFO] [stdout] 9: 0x55ff805eecd2 - std::panicking::default_hook::h8c6c66d3f3ba6768 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:224:9 [INFO] [stdout] 10: 0x55ff805ef794 - std::panicking::rust_panic_with_hook::h36f2fa0bb09f4069 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:624:17 [INFO] [stdout] 11: 0x55ff805ef270 - std::panicking::begin_panic_handler::{{closure}}::h9c42b65a42d06a7a [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:521:13 [INFO] [stdout] 12: 0x55ff805ed8a4 - std::sys_common::backtrace::__rust_end_short_backtrace::hc791bddfe31e532c [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x55ff805ef1d9 - rust_begin_unwind [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:517:5 [INFO] [stdout] 14: 0x55ff802b1b71 - core::panicking::panic_fmt::hf9de31d4acbce4db [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panicking.rs:101:14 [INFO] [stdout] 15: 0x55ff802b1c63 - core::result::unwrap_failed::ha0c84e81219e5878 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/result.rs:1617:5 [INFO] [stdout] 16: 0x55ff802e040f - core::result::Result::expect::h9cea571048f395a6 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/result.rs:1259:23 [INFO] [stdout] 17: 0x55ff803192b8 - global_supertrees::uniprot::load_mapping_file::h00f516cc3d2bcb7c [INFO] [stdout] at /opt/rustwide/workdir/src/uniprot.rs:34:13 [INFO] [stdout] 18: 0x55ff8030e68a - global_supertrees::tests::tests::test_merge_organisms::h5e7d9eafc562a308 [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:237:26 [INFO] [stdout] 19: 0x55ff8030e63a - global_supertrees::tests::tests::test_merge_organisms::{{closure}}::h0a3ac3d743013ccd [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:235:5 [INFO] [stdout] 20: 0x55ff8035a8ee - core::ops::function::FnOnce::call_once::h0899f2975578f2fe [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x55ff803aeae3 - core::ops::function::FnOnce::call_once::h61555a204318cc58 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x55ff803aeae3 - test::__rust_begin_short_backtrace::h8331e7b1cc7a6e62 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:578:5 [INFO] [stdout] 23: 0x55ff803ad568 - as core::ops::function::FnOnce>::call_once::h98582e597fa7f145 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 24: 0x55ff803ad568 - as core::ops::function::FnOnce<()>>::call_once::h38fa7a0826ecff45 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 25: 0x55ff803ad568 - std::panicking::try::do_call::h5b27d1cfffaa9f87 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:403:40 [INFO] [stdout] 26: 0x55ff803ad568 - std::panicking::try::h86f7124b3264bcbe [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:367:19 [INFO] [stdout] 27: 0x55ff803ad568 - std::panic::catch_unwind::h42dadf3598df7528 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panic.rs:129:14 [INFO] [stdout] 28: 0x55ff803ad568 - test::run_test_in_process::h9d4b7510f0910050 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:601:18 [INFO] [stdout] 29: 0x55ff803ad568 - test::run_test::run_test_inner::{{closure}}::h9b17f1fd181fe294 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:493:39 [INFO] [stdout] 30: 0x55ff8037b0be - test::run_test::run_test_inner::{{closure}}::h476f9211dfec6075 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/test/src/lib.rs:520:37 [INFO] [stdout] 31: 0x55ff8037b0be - std::sys_common::backtrace::__rust_begin_short_backtrace::h5c2db6945645950d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 32: 0x55ff8037f958 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h791169ea9ba5492d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/thread/mod.rs:481:17 [INFO] [stdout] 33: 0x55ff8037f958 - as core::ops::function::FnOnce<()>>::call_once::he930357ede3f4b4d [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 34: 0x55ff8037f958 - std::panicking::try::do_call::h0de4b1dd08a9aa80 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:403:40 [INFO] [stdout] 35: 0x55ff8037f958 - std::panicking::try::hf5b5c530df698d97 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panicking.rs:367:19 [INFO] [stdout] 36: 0x55ff8037f958 - std::panic::catch_unwind::hed97078f17dbf191 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/panic.rs:129:14 [INFO] [stdout] 37: 0x55ff8037f958 - std::thread::Builder::spawn_unchecked::{{closure}}::h2e673950929cba93 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/thread/mod.rs:480:30 [INFO] [stdout] 38: 0x55ff8037f958 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h8e18ddd18a52f010 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x55ff805f45c3 - as core::ops::function::FnOnce>::call_once::hbbbb32ef11ea0ad2 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 40: 0x55ff805f45c3 - as core::ops::function::FnOnce>::call_once::h3b8ef23699fc5385 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/alloc/src/boxed.rs:1636:9 [INFO] [stdout] 41: 0x55ff805f45c3 - std::sys::unix::thread::Thread::new::thread_start::ha57f5cba35f709b7 [INFO] [stdout] at /rustc/e784c962ea252f0874a4305168077e7048cb39e9/library/std/src/sys/unix/thread.rs:106:17 [INFO] [stdout] 42: 0x7f4f24695609 - start_thread [INFO] [stdout] 43: 0x7f4f24467293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::tests::test_batch_id_tax_mapping [INFO] [stdout] tests::tests::test_merge_organisms [INFO] [stdout] [INFO] [stdout] test result: FAILED. 14 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.66s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--bin global-supertrees' [INFO] running `Command { std: "docker" "inspect" "2d4ae1f20f5b594ebb7689efac6c5b2e781722aaf7f344b5beb49e9f9f395820", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2d4ae1f20f5b594ebb7689efac6c5b2e781722aaf7f344b5beb49e9f9f395820", kill_on_drop: false }` [INFO] [stdout] 2d4ae1f20f5b594ebb7689efac6c5b2e781722aaf7f344b5beb49e9f9f395820