[INFO] fetching crate checkm 0.1.0... [INFO] testing checkm-0.1.0 against beta-2021-09-08 for beta-1.56-1 [INFO] extracting crate checkm 0.1.0 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate checkm 0.1.0 on toolchain beta-2021-09-08 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate checkm 0.1.0 [INFO] finished tweaking crates.io crate checkm 0.1.0 [INFO] tweaked toml for crates.io crate checkm 0.1.0 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] de633af4f8800423747554fe17a9128d97c4d359d5c3b508274f9f77e88ba64f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "de633af4f8800423747554fe17a9128d97c4d359d5c3b508274f9f77e88ba64f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "de633af4f8800423747554fe17a9128d97c4d359d5c3b508274f9f77e88ba64f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "de633af4f8800423747554fe17a9128d97c4d359d5c3b508274f9f77e88ba64f", kill_on_drop: false }` [INFO] [stdout] de633af4f8800423747554fe17a9128d97c4d359d5c3b508274f9f77e88ba64f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 82e173f0e3f966c6e0728bbf4b546d52bcfc6bb8f65c96a4ff67620dc929cbfc [INFO] running `Command { std: "docker" "start" "-a" "82e173f0e3f966c6e0728bbf4b546d52bcfc6bb8f65c96a4ff67620dc929cbfc", kill_on_drop: false }` [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling bstr v0.2.16 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling checkm v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 7.17s [INFO] running `Command { std: "docker" "inspect" "82e173f0e3f966c6e0728bbf4b546d52bcfc6bb8f65c96a4ff67620dc929cbfc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "82e173f0e3f966c6e0728bbf4b546d52bcfc6bb8f65c96a4ff67620dc929cbfc", kill_on_drop: false }` [INFO] [stdout] 82e173f0e3f966c6e0728bbf4b546d52bcfc6bb8f65c96a4ff67620dc929cbfc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] aa8772c30d230ebb6bbafe279fc78e997b830ff12738f90fce9d7f71f6a7a279 [INFO] running `Command { std: "docker" "start" "-a" "aa8772c30d230ebb6bbafe279fc78e997b830ff12738f90fce9d7f71f6a7a279", kill_on_drop: false }` [INFO] [stderr] Compiling checkm v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.71s [INFO] running `Command { std: "docker" "inspect" "aa8772c30d230ebb6bbafe279fc78e997b830ff12738f90fce9d7f71f6a7a279", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aa8772c30d230ebb6bbafe279fc78e997b830ff12738f90fce9d7f71f6a7a279", kill_on_drop: false }` [INFO] [stdout] aa8772c30d230ebb6bbafe279fc78e997b830ff12738f90fce9d7f71f6a7a279 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] b7e733e397926ef53cb51e880593ecd6e7ed7e12781c170123dc7592332e7b7d [INFO] running `Command { std: "docker" "start" "-a" "b7e733e397926ef53cb51e880593ecd6e7ed7e12781c170123dc7592332e7b7d", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/checkm-5d9609d99322f38d) [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test test::test_retrieve ... ok [INFO] [stdout] test test::test_ordering_5times ... ok [INFO] [stdout] test test::test_fasta_ordering_4times_min_completeness ... ok [INFO] [stdout] test test::test_fasta_ordering_4times ... ok [INFO] [stderr] Doc-tests checkm [INFO] [stdout] test test::test_ordering_4times ... ok [INFO] [stdout] test test::test_good_quality_genome_names ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "b7e733e397926ef53cb51e880593ecd6e7ed7e12781c170123dc7592332e7b7d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b7e733e397926ef53cb51e880593ecd6e7ed7e12781c170123dc7592332e7b7d", kill_on_drop: false }` [INFO] [stdout] b7e733e397926ef53cb51e880593ecd6e7ed7e12781c170123dc7592332e7b7d