[INFO] fetching crate bio-jtools 2021.1.21... [INFO] testing bio-jtools-2021.1.21 against beta-2021-09-08 for beta-1.56-1 [INFO] extracting crate bio-jtools 2021.1.21 into /workspace/builds/worker-13/source [INFO] validating manifest of crates.io crate bio-jtools 2021.1.21 on toolchain beta-2021-09-08 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate bio-jtools 2021.1.21 [INFO] finished tweaking crates.io crate bio-jtools 2021.1.21 [INFO] tweaked toml for crates.io crate bio-jtools 2021.1.21 written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate crates.io crate bio-jtools 2021.1.21 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rust-lapper v0.4.4 [INFO] [stderr] Downloaded unindent v0.1.5 [INFO] [stderr] Downloaded bam v0.1.1 [INFO] [stderr] Downloaded needletail v0.4.0 [INFO] [stderr] Downloaded indoc-impl v0.3.5 [INFO] [stderr] Downloaded indoc v0.3.5 [INFO] [stderr] Downloaded bzip2-sys v0.1.8+1.0.8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 02dfec9513b8fa9855ebe2b43be65b0237612b0dd201cb92f88fc913bc96040a [INFO] running `Command { std: "docker" "start" "-a" "02dfec9513b8fa9855ebe2b43be65b0237612b0dd201cb92f88fc913bc96040a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "02dfec9513b8fa9855ebe2b43be65b0237612b0dd201cb92f88fc913bc96040a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "02dfec9513b8fa9855ebe2b43be65b0237612b0dd201cb92f88fc913bc96040a", kill_on_drop: false }` [INFO] [stdout] 02dfec9513b8fa9855ebe2b43be65b0237612b0dd201cb92f88fc913bc96040a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5170a1bfc7c6dc165dedb33126387e3f8ba00512887e32c3abd5401dbd1cbd05 [INFO] running `Command { std: "docker" "start" "-a" "5170a1bfc7c6dc165dedb33126387e3f8ba00512887e32c3abd5401dbd1cbd05", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.0 [INFO] [stderr] Compiling proc-macro2 v1.0.8 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling syn v1.0.14 [INFO] [stderr] Compiling unindent v0.1.5 [INFO] [stderr] Compiling proc-macro-hack v0.5.16 [INFO] [stderr] Compiling bytecount v0.6.0 [INFO] [stderr] Compiling encode_unicode v0.3.6 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling rust-lapper v0.4.4 [INFO] [stderr] Compiling bzip2-sys v0.1.8+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Compiling dirs v1.0.5 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling time v0.1.43 [INFO] [stderr] Compiling regex-automata v0.1.8 [INFO] [stderr] Compiling flate2 v1.0.13 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling term v0.5.2 [INFO] [stderr] Compiling bam v0.1.1 [INFO] [stderr] Compiling chrono v0.4.11 [INFO] [stderr] Compiling bstr v0.2.11 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling aho-corasick v0.7.8 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling bzip2 v0.3.3 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling needletail v0.4.0 [INFO] [stderr] Compiling prettytable-rs v0.8.0 [INFO] [stderr] Compiling indoc-impl v0.3.5 [INFO] [stderr] Compiling indoc v0.3.5 [INFO] [stderr] Compiling bio-jtools v2021.1.21 (/opt/rustwide/workdir) [INFO] [stdout] warning: associated function is never used: `date` [INFO] [stdout] --> src/data/mod.rs:106:12 [INFO] [stdout] | [INFO] [stdout] 106 | pub fn date(&self) -> Date { [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `instrument` [INFO] [stdout] --> src/data/mod.rs:111:12 [INFO] [stdout] | [INFO] [stdout] 111 | pub fn instrument(&self) -> &str { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `run` [INFO] [stdout] --> src/data/mod.rs:116:12 [INFO] [stdout] | [INFO] [stdout] 116 | pub fn run(&self) -> u8 { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `position` [INFO] [stdout] --> src/data/mod.rs:121:12 [INFO] [stdout] | [INFO] [stdout] 121 | pub fn position(&self) -> char { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `flowcell` [INFO] [stdout] --> src/data/mod.rs:126:12 [INFO] [stdout] | [INFO] [stdout] 126 | pub fn flowcell(&self) -> &str { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `description` [INFO] [stdout] --> src/data/mod.rs:131:12 [INFO] [stdout] | [INFO] [stdout] 131 | pub fn description(&self) -> &str { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/utils/mod.rs:100:20 [INFO] [stdout] | [INFO] [stdout] 100 | ...c!(format!("Could not parse HTS file type from path. Supported file extensions are (excluding compression): {:?}", SUPPORTED_EXTENSIONS... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the panic!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 100 - panic!(format!("Could not parse HTS file type from path. Supported file extensions are (excluding compression): {:?}", SUPPORTED_EXTENSIONS)); [INFO] [stdout] 100 + panic!("Could not parse HTS file type from path. Supported file extensions are (excluding compression): {:?}", SUPPORTED_EXTENSIONS); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 7 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 21.49s [INFO] running `Command { std: "docker" "inspect" "5170a1bfc7c6dc165dedb33126387e3f8ba00512887e32c3abd5401dbd1cbd05", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5170a1bfc7c6dc165dedb33126387e3f8ba00512887e32c3abd5401dbd1cbd05", kill_on_drop: false }` [INFO] [stdout] 5170a1bfc7c6dc165dedb33126387e3f8ba00512887e32c3abd5401dbd1cbd05 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9bfa977f6bdce410f3d68869661a4cd276715c7a26c0d6d301a42f814ba9ad31 [INFO] running `Command { std: "docker" "start" "-a" "9bfa977f6bdce410f3d68869661a4cd276715c7a26c0d6d301a42f814ba9ad31", kill_on_drop: false }` [INFO] [stderr] Compiling bio-jtools v2021.1.21 (/opt/rustwide/workdir) [INFO] [stdout] warning: associated function is never used: `date` [INFO] [stdout] --> src/data/mod.rs:106:12 [INFO] [stdout] | [INFO] [stdout] 106 | pub fn date(&self) -> Date { [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `instrument` [INFO] [stdout] --> src/data/mod.rs:111:12 [INFO] [stdout] | [INFO] [stdout] 111 | pub fn instrument(&self) -> &str { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `run` [INFO] [stdout] --> src/data/mod.rs:116:12 [INFO] [stdout] | [INFO] [stdout] 116 | pub fn run(&self) -> u8 { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `position` [INFO] [stdout] --> src/data/mod.rs:121:12 [INFO] [stdout] | [INFO] [stdout] 121 | pub fn position(&self) -> char { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `flowcell` [INFO] [stdout] --> src/data/mod.rs:126:12 [INFO] [stdout] | [INFO] [stdout] 126 | pub fn flowcell(&self) -> &str { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `description` [INFO] [stdout] --> src/data/mod.rs:131:12 [INFO] [stdout] | [INFO] [stdout] 131 | pub fn description(&self) -> &str { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/utils/mod.rs:100:20 [INFO] [stdout] | [INFO] [stdout] 100 | ...c!(format!("Could not parse HTS file type from path. Supported file extensions are (excluding compression): {:?}", SUPPORTED_EXTENSIONS... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the panic!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 100 - panic!(format!("Could not parse HTS file type from path. Supported file extensions are (excluding compression): {:?}", SUPPORTED_EXTENSIONS)); [INFO] [stdout] 100 + panic!("Could not parse HTS file type from path. Supported file extensions are (excluding compression): {:?}", SUPPORTED_EXTENSIONS); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 7 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.87s [INFO] running `Command { std: "docker" "inspect" "9bfa977f6bdce410f3d68869661a4cd276715c7a26c0d6d301a42f814ba9ad31", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9bfa977f6bdce410f3d68869661a4cd276715c7a26c0d6d301a42f814ba9ad31", kill_on_drop: false }` [INFO] [stdout] 9bfa977f6bdce410f3d68869661a4cd276715c7a26c0d6d301a42f814ba9ad31 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 0ceb44bd72e3e27a5c3b25daa9dec0a4648bbe188ce1cb98b6a6b433cf09727c [INFO] running `Command { std: "docker" "start" "-a" "0ceb44bd72e3e27a5c3b25daa9dec0a4648bbe188ce1cb98b6a6b433cf09727c", kill_on_drop: false }` [INFO] [stderr] warning: associated function is never used: `date` [INFO] [stderr] --> src/data/mod.rs:106:12 [INFO] [stderr] | [INFO] [stderr] 106 | pub fn date(&self) -> Date { [INFO] [stderr] | ^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `instrument` [INFO] [stderr] --> src/data/mod.rs:111:12 [INFO] [stderr] | [INFO] [stderr] 111 | pub fn instrument(&self) -> &str { [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `run` [INFO] [stderr] --> src/data/mod.rs:116:12 [INFO] [stderr] | [INFO] [stderr] 116 | pub fn run(&self) -> u8 { [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `position` [INFO] [stderr] --> src/data/mod.rs:121:12 [INFO] [stderr] | [INFO] [stderr] 121 | pub fn position(&self) -> char { [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `flowcell` [INFO] [stderr] --> src/data/mod.rs:126:12 [INFO] [stderr] | [INFO] [stderr] 126 | pub fn flowcell(&self) -> &str { [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `description` [INFO] [stderr] --> src/data/mod.rs:131:12 [INFO] [stderr] | [INFO] [stderr] 131 | pub fn description(&self) -> &str { [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: panic message is not a string literal [INFO] [stderr] --> src/utils/mod.rs:100:20 [INFO] [stderr] | [INFO] [stderr] 100 | ...c!(format!("Could not parse HTS file type from path. Supported file extensions are (excluding compression): {:?}", SUPPORTED_EXTENSIONS... [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stderr] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] = note: the panic!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stderr] help: remove the `format!(..)` macro call [INFO] [stderr] | [INFO] [stderr] 100 - panic!(format!("Could not parse HTS file type from path. Supported file extensions are (excluding compression): {:?}", SUPPORTED_EXTENSIONS)); [INFO] [stderr] 100 + panic!("Could not parse HTS file type from path. Supported file extensions are (excluding compression): {:?}", SUPPORTED_EXTENSIONS); [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: `bio-jtools` (bin "bjt" test) generated 7 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/bjt-14b7154b8a18d3c9) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "0ceb44bd72e3e27a5c3b25daa9dec0a4648bbe188ce1cb98b6a6b433cf09727c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0ceb44bd72e3e27a5c3b25daa9dec0a4648bbe188ce1cb98b6a6b433cf09727c", kill_on_drop: false }` [INFO] [stdout] 0ceb44bd72e3e27a5c3b25daa9dec0a4648bbe188ce1cb98b6a6b433cf09727c