[INFO] cloning repository https://github.com/zaeleus/noodles [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] de4637797db4df38d6ccad3784e67fd87770a2fc [INFO] testing zaeleus/noodles against beta-2021-09-08 for beta-1.56-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles" "/workspace/builds/worker-1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/zaeleus/noodles on toolchain beta-2021-09-08 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/zaeleus/noodles [INFO] finished tweaking git repo https://github.com/zaeleus/noodles [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles written to /workspace/builds/worker-1/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 46310890f4cea316ec77476c05bd9b2ce898aafa87ac3bd939f9e9907b6f54d3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "46310890f4cea316ec77476c05bd9b2ce898aafa87ac3bd939f9e9907b6f54d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "46310890f4cea316ec77476c05bd9b2ce898aafa87ac3bd939f9e9907b6f54d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "46310890f4cea316ec77476c05bd9b2ce898aafa87ac3bd939f9e9907b6f54d3", kill_on_drop: false }` [INFO] [stdout] 46310890f4cea316ec77476c05bd9b2ce898aafa87ac3bd939f9e9907b6f54d3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 35025274d64c5b34a9f56a7726ee475a0ec3f906bf9b6317678fc9ed31e6546c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "35025274d64c5b34a9f56a7726ee475a0ec3f906bf9b6317678fc9ed31e6546c", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling noodles v0.7.0 (/opt/rustwide/workdir/noodles) [INFO] [stderr] Compiling noodles-fastq v0.1.1 (/opt/rustwide/workdir/noodles-fastq) [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling noodles-gff v0.1.1 (/opt/rustwide/workdir/noodles-gff) [INFO] [stderr] Compiling noodles-bgzf v0.4.0 (/opt/rustwide/workdir/noodles-bgzf) [INFO] [stderr] Compiling md-5 v0.9.1 [INFO] [stderr] Compiling noodles-sam v0.2.2 (/opt/rustwide/workdir/noodles-sam) [INFO] [stderr] Compiling noodles-csi v0.3.0 (/opt/rustwide/workdir/noodles-csi) [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling noodles-tabix v0.6.0 (/opt/rustwide/workdir/noodles-tabix) [INFO] [stderr] Compiling nom v7.0.0 [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling noodles-core v0.1.2 (/opt/rustwide/workdir/noodles-core) [INFO] [stderr] Compiling noodles-fasta v0.2.2 (/opt/rustwide/workdir/noodles-fasta) [INFO] [stderr] Compiling noodles-bam v0.4.0 (/opt/rustwide/workdir/noodles-bam) [INFO] [stderr] Compiling noodles-cram v0.4.0 (/opt/rustwide/workdir/noodles-cram) [INFO] [stderr] Compiling noodles-vcf v0.6.0 (/opt/rustwide/workdir/noodles-vcf) [INFO] [stderr] Compiling noodles-bcf v0.5.1 (/opt/rustwide/workdir/noodles-bcf) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 17.16s [INFO] running `Command { std: "docker" "inspect" "35025274d64c5b34a9f56a7726ee475a0ec3f906bf9b6317678fc9ed31e6546c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "35025274d64c5b34a9f56a7726ee475a0ec3f906bf9b6317678fc9ed31e6546c", kill_on_drop: false }` [INFO] [stdout] 35025274d64c5b34a9f56a7726ee475a0ec3f906bf9b6317678fc9ed31e6546c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3959543c9c577f833caa00c9300b80136b4d81a11cf449f8eac85976429a797f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3959543c9c577f833caa00c9300b80136b4d81a11cf449f8eac85976429a797f", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.76 [INFO] [stderr] Compiling noodles-fastq v0.1.1 (/opt/rustwide/workdir/noodles-fastq) [INFO] [stderr] Compiling noodles v0.7.0 (/opt/rustwide/workdir/noodles) [INFO] [stderr] Compiling tokio v1.11.0 [INFO] [stderr] Compiling noodles-gff v0.1.1 (/opt/rustwide/workdir/noodles-gff) [INFO] [stderr] Compiling noodles-core v0.1.2 (/opt/rustwide/workdir/noodles-core) [INFO] [stderr] Compiling noodles-fasta v0.2.2 (/opt/rustwide/workdir/noodles-fasta) [INFO] [stderr] Compiling tokio-macros v1.3.0 [INFO] [stderr] Compiling noodles-bam v0.4.0 (/opt/rustwide/workdir/noodles-bam) [INFO] [stderr] Compiling noodles-bcf v0.5.1 (/opt/rustwide/workdir/noodles-bcf) [INFO] [stderr] Compiling noodles-vcf v0.6.0 (/opt/rustwide/workdir/noodles-vcf) [INFO] [stderr] Compiling noodles-sam v0.2.2 (/opt/rustwide/workdir/noodles-sam) [INFO] [stderr] Compiling noodles-bgzf v0.4.0 (/opt/rustwide/workdir/noodles-bgzf) [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> noodles-bam/examples/bam_idxstats_async.rs:20:54 [INFO] [stdout] | [INFO] [stdout] 20 | let mut reader = File::open(&src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `futures` [INFO] [stdout] --> noodles-bcf/examples/bcf_view_async.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use futures::TryStreamExt; [INFO] [stdout] | ^^^^^^^ use of undeclared crate or module `futures` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bcf` [INFO] [stdout] --> noodles-bcf/examples/bcf_view_async.rs:15:53 [INFO] [stdout] | [INFO] [stdout] 15 | let mut reader = File::open(src).await.map(bcf::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bcf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `tokio::io::BufReader` [INFO] [stdout] --> noodles-sam/examples/sam_count_async.rs:11:16 [INFO] [stdout] | [INFO] [stdout] 11 | io::{self, BufReader}, [INFO] [stdout] | ^^^^^^^^^ no `BufReader` in `io` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `futures` [INFO] [stdout] --> noodles-sam/examples/sam_count_async.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use futures::TryStreamExt; [INFO] [stdout] | ^^^^^^^ use of undeclared crate or module `futures` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `sam` [INFO] [stdout] --> noodles-sam/examples/sam_count_async.rs:21:19 [INFO] [stdout] | [INFO] [stdout] 21 | .map(sam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `sam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `tokio::io::BufReader` [INFO] [stdout] --> noodles-vcf/examples/vcf_read_header_async.rs:13:16 [INFO] [stdout] | [INFO] [stdout] 13 | io::{self, BufReader}, [INFO] [stdout] | ^^^^^^^^^ no `BufReader` in `io` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `r#async` in `bai` [INFO] [stdout] --> noodles-bam/examples/bam_idxstats_async.rs:23:22 [INFO] [stdout] | [INFO] [stdout] 23 | let index = bai::r#async::read(src.with_extension("bam.bai")).await?; [INFO] [stdout] | ^^^^^^^ could not find `r#async` in `bai` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `vcf` [INFO] [stdout] --> noodles-vcf/examples/vcf_read_header_async.rs:23:19 [INFO] [stdout] | [INFO] [stdout] 23 | .map(vcf::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `vcf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bgzf` [INFO] [stdout] --> noodles-bgzf/examples/bgzf_read_async.rs:14:54 [INFO] [stdout] | [INFO] [stdout] 14 | let mut reader = File::open(src).await.map(bgzf::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bgzf` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `noodles-bcf` due to 3 previous errors [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] warning: unused import: `BinningIndex` [INFO] [stdout] --> noodles-bam/examples/bam_idxstats_async.rs:12:19 [INFO] [stdout] | [INFO] [stdout] 12 | use noodles_csi::{BinningIndex, BinningIndexReferenceSequence}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BinningIndexReferenceSequence` [INFO] [stdout] --> noodles-bam/examples/bam_idxstats_async.rs:12:33 [INFO] [stdout] | [INFO] [stdout] 12 | use noodles_csi::{BinningIndex, BinningIndexReferenceSequence}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 3 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors; 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0433`. [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `BufWriter` in `io` [INFO] [stdout] --> noodles-bgzf/examples/bgzf_read_async.rs:17:26 [INFO] [stdout] | [INFO] [stdout] 17 | let mut writer = io::BufWriter::new(stdout); [INFO] [stdout] | ^^^^^^^^^ not found in `io` [INFO] [stdout] | [INFO] [stdout] help: consider importing this struct [INFO] [stdout] | [INFO] [stdout] 5 | use std::io::BufWriter; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find function `copy_buf` in module `io` [INFO] [stdout] --> noodles-bgzf/examples/bgzf_read_async.rs:19:9 [INFO] [stdout] | [INFO] [stdout] 19 | io::copy_buf(&mut reader, &mut writer).await?; [INFO] [stdout] | ^^^^^^^^ not found in `io` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 3 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0425, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0425`. [INFO] [stdout] [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "3959543c9c577f833caa00c9300b80136b4d81a11cf449f8eac85976429a797f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3959543c9c577f833caa00c9300b80136b4d81a11cf449f8eac85976429a797f", kill_on_drop: false }` [INFO] [stdout] 3959543c9c577f833caa00c9300b80136b4d81a11cf449f8eac85976429a797f